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Eleven grand challenges in single-cell data science.
Lähnemann D, Köster J, Szczurek E, McCarthy DJ, Hicks SC, Robinson MD, Vallejos CA, Campbell KR, Beerenwinkel N, Mahfouz A, Pinello L, Skums P, Stamatakis A, Attolini CS, Aparicio S, Baaijens J, Balvert M, Barbanson B, Cappuccio A, Corleone G, Dutilh BE, Florescu M, Guryev V, Holmer R, Jahn K, Lobo TJ, Keizer EM, Khatri I, Kielbasa SM, Korbel JO, Kozlov AM, Kuo TH, Lelieveldt BPF, Mandoiu II, Marioni JC, Marschall T, Mölder F, Niknejad A, Rączkowska A, Reinders M, Ridder J, Saliba AE, Somarakis A, Stegle O, Theis FJ, Yang H, Zelikovsky A, McHardy AC, Raphael BJ, Shah SP, Schönhuth A. Lähnemann D, et al. Among authors: beerenwinkel n. Genome Biol. 2020 Feb 7;21(1):31. doi: 10.1186/s13059-020-1926-6. Genome Biol. 2020. PMID: 32033589 Free PMC article. Review.
Modeling mutual exclusivity of cancer mutations.
Szczurek E, Beerenwinkel N. Szczurek E, et al. Among authors: beerenwinkel n. PLoS Comput Biol. 2014 Mar 27;10(3):e1003503. doi: 10.1371/journal.pcbi.1003503. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24675718 Free PMC article.
Viral quasispecies assembly via maximal clique enumeration.
Töpfer A, Marschall T, Bull RA, Luciani F, Schönhuth A, Beerenwinkel N. Töpfer A, et al. Among authors: beerenwinkel n. PLoS Comput Biol. 2014 Mar 27;10(3):e1003515. doi: 10.1371/journal.pcbi.1003515. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24675810 Free PMC article.
TiMEx: a waiting time model for mutually exclusive cancer alterations.
Constantinescu S, Szczurek E, Mohammadi P, Rahnenführer J, Beerenwinkel N. Constantinescu S, et al. Among authors: beerenwinkel n. Bioinformatics. 2016 Apr 1;32(7):968-75. doi: 10.1093/bioinformatics/btv400. Epub 2015 Jul 9. Bioinformatics. 2016. PMID: 26163509
gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens.
Schmich F, Szczurek E, Kreibich S, Dilling S, Andritschke D, Casanova A, Low SH, Eicher S, Muntwiler S, Emmenlauer M, Rämö P, Conde-Alvarez R, von Mering C, Hardt WD, Dehio C, Beerenwinkel N. Schmich F, et al. Among authors: beerenwinkel n. Genome Biol. 2015 Oct 7;16:220. doi: 10.1186/s13059-015-0783-1. Genome Biol. 2015. PMID: 26445817 Free PMC article.
Erratum to: gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens.
Schmich F, Szczurek E, Kreibich S, Dilling S, Andritschke D, Casanova A, Low SH, Eicher S, Muntwiler S, Emmenlauer M, Rämo P, Conde-Alvarez R, von Mering C, Hardt WD, Dehio C, Beerenwinkel N. Schmich F, et al. Among authors: beerenwinkel n. Genome Biol. 2015 Oct 21;16:233. doi: 10.1186/s13059-015-0807-x. Genome Biol. 2015. PMID: 26490954 Free PMC article. No abstract available.
Tree inference for single-cell data.
Jahn K, Kuipers J, Beerenwinkel N. Jahn K, et al. Among authors: beerenwinkel n. Genome Biol. 2016 May 5;17:86. doi: 10.1186/s13059-016-0936-x. Genome Biol. 2016. PMID: 27149953 Free PMC article.
Advances in understanding tumour evolution through single-cell sequencing.
Kuipers J, Jahn K, Beerenwinkel N. Kuipers J, et al. Among authors: beerenwinkel n. Biochim Biophys Acta Rev Cancer. 2017 Apr;1867(2):127-138. doi: 10.1016/j.bbcan.2017.02.001. Epub 2017 Feb 11. Biochim Biophys Acta Rev Cancer. 2017. PMID: 28193548 Free PMC article. Review.
247 results