Dupont CL - Search Results

1

Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment.

Okie JG, Poret-Peterson AT, Lee ZM, Richter A, Alcaraz LD, Eguiarte LE, Siefert JL, Souza V, Dupont CL, Elser JJ. Okie JG, et al. Among authors: dupont cl. Elife. 2020 Jan 28;9:e49816. doi: 10.7554/eLife.49816. Elife. 2020. PMID: 31989922 Free PMC article.

2

Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B. Dupont CL, et al. PLoS One. 2014 Feb 27;9(2):e89549. doi: 10.1371/journal.pone.0089549. eCollection 2014. PLoS One. 2014. PMID: 24586863 Free PMC article.

3

Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond.

Lee ZM, Poret-Peterson AT, Siefert JL, Kaul D, Moustafa A, Allen AE, Dupont CL, Eguiarte LE, Souza V, Elser JJ. Lee ZM, et al. Among authors: dupont cl. Front Microbiol. 2017 May 30;8:949. doi: 10.3389/fmicb.2017.00949. eCollection 2017. Front Microbiol. 2017. PMID: 28611750 Free PMC article.

4

Genomic and functional adaptation in surface ocean planktonic prokaryotes.

Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, Eisenstadt E, Rogers YH, Friedman R, Frazier M, Venter JC. Yooseph S, et al. Among authors: dupont cl. Nature. 2010 Nov 4;468(7320):60-6. doi: 10.1038/nature09530. Nature. 2010. PMID: 21048761

5

Characterization of Prochlorococcus clades from iron-depleted oceanic regions.

Rusch DB, Martiny AC, Dupont CL, Halpern AL, Venter JC. Rusch DB, et al. Among authors: dupont cl. Proc Natl Acad Sci U S A. 2010 Sep 14;107(37):16184-9. doi: 10.1073/pnas.1009513107. Epub 2010 Aug 23. Proc Natl Acad Sci U S A. 2010. PMID: 20733077 Free PMC article.

6

Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly.

Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO. Llorens-Marès T, et al. Among authors: dupont cl. ISME J. 2017 Jan;11(1):201-211. doi: 10.1038/ismej.2016.93. Epub 2016 Jul 8. ISME J. 2017. PMID: 27392085 Free PMC article.

7

A comparative metagenomic study reveals microbial diversity and their role in the biogeochemical cycling of Pangong lake.

Rathour R, Gupta J, Mishra A, Rajeev AC, Dupont CL, Thakur IS. Rathour R, et al. Among authors: dupont cl. Sci Total Environ. 2020 Aug 20;731:139074. doi: 10.1016/j.scitotenv.2020.139074. Epub 2020 Apr 28. Sci Total Environ. 2020. PMID: 32417476

8

VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes.

Espinoza JL, Dupont CL. Espinoza JL, et al. Among authors: dupont cl. BMC Bioinformatics. 2022 Oct 12;23(1):419. doi: 10.1186/s12859-022-04973-8. BMC Bioinformatics. 2022. PMID: 36224545 Free PMC article.

9

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.

Dupont CL, Rusch DB, Yooseph S, Lombardo MJ, Richter RA, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH, Halpern AL, Lasken RS, Nealson K, Friedman R, Venter JC. Dupont CL, et al. ISME J. 2012 Jun;6(6):1186-99. doi: 10.1038/ismej.2011.189. Epub 2011 Dec 15. ISME J. 2012. PMID: 22170421 Free PMC article.

10

Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation.

Bartelme RP, Custer JM, Dupont CL, Espinoza JL, Torralba M, Khalili B, Carini P. Bartelme RP, et al. Among authors: dupont cl. mSphere. 2020 Jan 29;5(1):e00024-20. doi: 10.1128/mSphere.00024-20. mSphere. 2020. PMID: 31996418 Free PMC article.

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