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The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.
Drysdale R, Cook CE, Petryszak R, Baillie-Gerritsen V, Barlow M, Gasteiger E, Gruhl F, Haas J, Lanfear J, Lopez R, Redaschi N, Stockinger H, Teixeira D, Venkatesan A; Elixir Core Data Resource Forum; Blomberg N, Durinx C, McEntyre J. Drysdale R, et al. Among authors: stockinger h. Bioinformatics. 2020 Apr 15;36(8):2636-2642. doi: 10.1093/bioinformatics/btz959. Bioinformatics. 2020. PMID: 31950984 Free PMC article.
Identifying ELIXIR Core Data Resources.
Durinx C, McEntyre J, Appel R, Apweiler R, Barlow M, Blomberg N, Cook C, Gasteiger E, Kim JH, Lopez R, Redaschi N, Stockinger H, Teixeira D, Valencia A. Durinx C, et al. Among authors: stockinger h. F1000Res. 2016 Sep 30;5:ELIXIR-2422. doi: 10.12688/f1000research.9656.2. eCollection 2016. F1000Res. 2016. PMID: 27803796 Free PMC article.
ExPASy: SIB bioinformatics resource portal.
Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, de Castro E, Duvaud S, Flegel V, Fortier A, Gasteiger E, Grosdidier A, Hernandez C, Ioannidis V, Kuznetsov D, Liechti R, Moretti S, Mostaguir K, Redaschi N, Rossier G, Xenarios I, Stockinger H. Artimo P, et al. Among authors: stockinger h. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W597-603. doi: 10.1093/nar/gks400. Epub 2012 May 31. Nucleic Acids Res. 2012. PMID: 22661580 Free PMC article.
The bio.tools registry of software tools and data resources for the life sciences.
Ison J, Ienasescu H, Chmura P, Rydza E, Ménager H, Kalaš M, Schwämmle V, Grüning B, Beard N, Lopez R, Duvaud S, Stockinger H, Persson B, Vařeková RS, Raček T, Vondrášek J, Peterson H, Salumets A, Jonassen I, Hooft R, Nyrönen T, Valencia A, Capella S, Gelpí J, Zambelli F, Savakis B, Leskošek B, Rapacki K, Blanchet C, Jimenez R, Oliveira A, Vriend G, Collin O, van Helden J, Løngreen P, Brunak S. Ison J, et al. Among authors: stockinger h. Genome Biol. 2019 Aug 12;20(1):164. doi: 10.1186/s13059-019-1772-6. Genome Biol. 2019. PMID: 31405382 Free PMC article.
Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: stockinger h. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.
Experience using web services for biological sequence analysis.
Stockinger H, Attwood T, Chohan SN, Côté R, Cudré-Mauroux P, Falquet L, Fernandes P, Finn RD, Hupponen T, Korpelainen E, Labarga A, Laugraud A, Lima T, Pafilis E, Pagni M, Pettifer S, Phan I, Rahman N. Stockinger H, et al. Brief Bioinform. 2008 Nov;9(6):493-505. doi: 10.1093/bib/bbn029. Epub 2008 Jul 11. Brief Bioinform. 2008. PMID: 18621748 Free PMC article.
RAxML Grove: an empirical phylogenetic tree database.
Höhler D, Pfeiffer W, Ioannidis V, Stockinger H, Stamatakis A. Höhler D, et al. Among authors: stockinger h. Bioinformatics. 2022 Mar 4;38(6):1741-1742. doi: 10.1093/bioinformatics/btab863. Bioinformatics. 2022. PMID: 34962976 Free PMC article.
TRAL: tandem repeat annotation library.
Schaper E, Korsunsky A, Pečerska J, Messina A, Murri R, Stockinger H, Zoller S, Xenarios I, Anisimova M. Schaper E, et al. Among authors: stockinger h. Bioinformatics. 2015 Sep 15;31(18):3051-3. doi: 10.1093/bioinformatics/btv306. Epub 2015 May 18. Bioinformatics. 2015. PMID: 25987568 Free article.
254 results