Bracht JR - Search Results

1

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms.

Lindblad KA, Pathmanathan JS, Moreira S, Bracht JR, Sebra RP, Hutton ER, Landweber LF. Lindblad KA, et al. Among authors: bracht jr. BMC Genomics. 2019 Dec 30;20(1):1037. doi: 10.1186/s12864-019-6189-9. BMC Genomics. 2019. PMID: 31888453 Free PMC article.

2

Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax.

Bracht JR, Perlman DH, Landweber LF. Bracht JR, et al. Genome Biol. 2012 Oct 17;13(10):R99. doi: 10.1186/gb-2012-13-10-r99. Genome Biol. 2012. PMID: 23075511 Free PMC article.

3

Piwi-interacting RNAs protect DNA against loss during Oxytricha genome rearrangement.

Fang W, Wang X, Bracht JR, Nowacki M, Landweber LF. Fang W, et al. Among authors: bracht jr. Cell. 2012 Dec 7;151(6):1243-55. doi: 10.1016/j.cell.2012.10.045. Cell. 2012. PMID: 23217708 Free PMC article.

4

Genomes on the edge: programmed genome instability in ciliates.

Bracht JR, Fang W, Goldman AD, Dolzhenko E, Stein EM, Landweber LF. Bracht JR, et al. Cell. 2013 Jan 31;152(3):406-16. doi: 10.1016/j.cell.2013.01.005. Cell. 2013. PMID: 23374338 Free PMC article. Review.

5

The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang WJ, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF. Swart EC, et al. Among authors: bracht jr. PLoS Biol. 2013;11(1):e1001473. doi: 10.1371/journal.pbio.1001473. Epub 2013 Jan 29. PLoS Biol. 2013. PMID: 23382650 Free PMC article.

6

The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development.

Chen X, Bracht JR, Goldman AD, Dolzhenko E, Clay DM, Swart EC, Perlman DH, Doak TG, Stuart A, Amemiya CT, Sebra RP, Landweber LF. Chen X, et al. Among authors: bracht jr. Cell. 2014 Aug 28;158(5):1187-1198. doi: 10.1016/j.cell.2014.07.034. Cell. 2014. PMID: 25171416 Free PMC article.

7

Chromosome fusions triggered by noncoding RNA.

Bracht JR, Wang X, Shetty K, Chen X, Uttarotai GJ, Callihan EC, McCloud SS, Clay DM, Wang J, Nowacki M, Landweber LF. Bracht JR, et al. RNA Biol. 2017 May 4;14(5):620-631. doi: 10.1080/15476286.2016.1195940. Epub 2016 Jun 7. RNA Biol. 2017. PMID: 27267579 Free PMC article.

8

Thousands of RNA-cached copies of whole chromosomes are present in the ciliate Oxytricha during development.

Lindblad KA, Bracht JR, Williams AE, Landweber LF. Lindblad KA, et al. Among authors: bracht jr. RNA. 2017 Aug;23(8):1200-1208. doi: 10.1261/rna.058511.116. Epub 2017 Apr 27. RNA. 2017. PMID: 28450531 Free PMC article.

9

Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization.

Beh LY, Debelouchina GT, Clay DM, Thompson RE, Lindblad KA, Hutton ER, Bracht JR, Sebra RP, Muir TW, Landweber LF. Beh LY, et al. Among authors: bracht jr. Cell. 2019 Jun 13;177(7):1781-1796.e25. doi: 10.1016/j.cell.2019.04.028. Epub 2019 May 16. Cell. 2019. PMID: 31104845 Free PMC article.

10

Programmed genome rearrangements in Oxytricha produce transcriptionally active extrachromosomal circular DNA.

Yerlici VT, Lu MW, Hoge CR, Miller RV, Neme R, Khurana JS, Bracht JR, Landweber LF. Yerlici VT, et al. Among authors: bracht jr. Nucleic Acids Res. 2019 Oct 10;47(18):9741-9760. doi: 10.1093/nar/gkz725. Nucleic Acids Res. 2019. PMID: 31504770 Free PMC article.

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