Saelens W - Search Results

1

NicheNet: modeling intercellular communication by linking ligands to target genes.

Browaeys R, Saelens W, Saeys Y. Browaeys R, et al. Among authors: saelens w. Nat Methods. 2020 Feb;17(2):159-162. doi: 10.1038/s41592-019-0667-5. Epub 2019 Dec 9. Nat Methods. 2020. PMID: 31819264

2

A comprehensive evaluation of module detection methods for gene expression data.

Saelens W, Cannoodt R, Saeys Y. Saelens W, et al. Nat Commun. 2018 Mar 15;9(1):1090. doi: 10.1038/s41467-018-03424-4. Nat Commun. 2018. PMID: 29545622 Free PMC article.

3

A comparison of single-cell trajectory inference methods.

Saelens W, Cannoodt R, Todorov H, Saeys Y. Saelens W, et al. Nat Biotechnol. 2019 May;37(5):547-554. doi: 10.1038/s41587-019-0071-9. Epub 2019 Apr 1. Nat Biotechnol. 2019. PMID: 30936559

4

Trajectory-based differential expression analysis for single-cell sequencing data.

Van den Berge K, Roux de Bézieux H, Street K, Saelens W, Cannoodt R, Saeys Y, Dudoit S, Clement L. Van den Berge K, et al. Among authors: saelens w. Nat Commun. 2020 Mar 5;11(1):1201. doi: 10.1038/s41467-020-14766-3. Nat Commun. 2020. PMID: 32139671 Free PMC article.

5

A scalable SCENIC workflow for single-cell gene regulatory network analysis.

Van de Sande B, Flerin C, Davie K, De Waegeneer M, Hulselmans G, Aibar S, Seurinck R, Saelens W, Cannoodt R, Rouchon Q, Verbeiren T, De Maeyer D, Reumers J, Saeys Y, Aerts S. Van de Sande B, et al. Among authors: saelens w. Nat Protoc. 2020 Jul;15(7):2247-2276. doi: 10.1038/s41596-020-0336-2. Epub 2020 Jun 19. Nat Protoc. 2020. PMID: 32561888

6

Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells.

Cannoodt R, Saelens W, Deconinck L, Saeys Y. Cannoodt R, et al. Among authors: saelens w. Nat Commun. 2021 Jun 24;12(1):3942. doi: 10.1038/s41467-021-24152-2. Nat Commun. 2021. PMID: 34168133 Free PMC article.

7

Computational methods for trajectory inference from single-cell transcriptomics.

Cannoodt R, Saelens W, Saeys Y. Cannoodt R, et al. Among authors: saelens w. Eur J Immunol. 2016 Nov;46(11):2496-2506. doi: 10.1002/eji.201646347. Epub 2016 Oct 19. Eur J Immunol. 2016. PMID: 27682842 Free article. Review.

8

Network Inference from Single-Cell Transcriptomic Data.

Todorov H, Cannoodt R, Saelens W, Saeys Y. Todorov H, et al. Among authors: saelens w. Methods Mol Biol. 2019;1883:235-249. doi: 10.1007/978-1-4939-8882-2_10. Methods Mol Biol. 2019. PMID: 30547403

9

TinGa: fast and flexible trajectory inference with Growing Neural Gas.

Todorov H, Cannoodt R, Saelens W, Saeys Y. Todorov H, et al. Among authors: saelens w. Bioinformatics. 2020 Jul 1;36(Suppl_1):i66-i74. doi: 10.1093/bioinformatics/btaa463. Bioinformatics. 2020. PMID: 32657409 Free PMC article.

10

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches.

Guilliams M, Bonnardel J, Haest B, Vanderborght B, Wagner C, Remmerie A, Bujko A, Martens L, Thoné T, Browaeys R, De Ponti FF, Vanneste B, Zwicker C, Svedberg FR, Vanhalewyn T, Gonçalves A, Lippens S, Devriendt B, Cox E, Ferrero G, Wittamer V, Willaert A, Kaptein SJF, Neyts J, Dallmeier K, Geldhof P, Casaert S, Deplancke B, Ten Dijke P, Hoorens A, Vanlander A, Berrevoet F, Van Nieuwenhove Y, Saeys Y, Saelens W, Van Vlierberghe H, Devisscher L, Scott CL. Guilliams M, et al. Among authors: saelens w. Cell. 2022 Jan 20;185(2):379-396.e38. doi: 10.1016/j.cell.2021.12.018. Epub 2022 Jan 11. Cell. 2022. PMID: 35021063 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

22 results

Search Page

Filters