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A combined structural and biochemical approach reveals translocation and stalling of UvrB on the DNA lesion as a mechanism of damage verification in bacterial nucleotide excision repair.
Jaciuk M, Swuec P, Gaur V, Kasprzak JM, Renault L, Dobrychłop M, Nirwal S, Bujnicki JM, Costa A, Nowotny M. Jaciuk M, et al. Among authors: kasprzak jm. DNA Repair (Amst). 2020 Jan;85:102746. doi: 10.1016/j.dnarep.2019.102746. Epub 2019 Nov 6. DNA Repair (Amst). 2020. PMID: 31739207 Free PMC article.
Molecular evolution of dihydrouridine synthases.
Kasprzak JM, Czerwoniec A, Bujnicki JM. Kasprzak JM, et al. BMC Bioinformatics. 2012 Jun 28;13:153. doi: 10.1186/1471-2105-13-153. BMC Bioinformatics. 2012. PMID: 22741570 Free PMC article.
The architecture of the Schizosaccharomyces pombe CCR4-NOT complex.
Ukleja M, Cuellar J, Siwaszek A, Kasprzak JM, Czarnocki-Cieciura M, Bujnicki JM, Dziembowski A, Valpuesta JM. Ukleja M, et al. Among authors: kasprzak jm. Nat Commun. 2016 Jan 25;7:10433. doi: 10.1038/ncomms10433. Nat Commun. 2016. PMID: 26804377 Free PMC article.
Computational modeling of protein-RNA complex structures.
Tuszynska I, Matelska D, Magnus M, Chojnowski G, Kasprzak JM, Kozlowski LP, Dunin-Horkawicz S, Bujnicki JM. Tuszynska I, et al. Among authors: kasprzak jm. Methods. 2014 Feb;65(3):310-9. doi: 10.1016/j.ymeth.2013.09.014. Epub 2013 Sep 29. Methods. 2014. PMID: 24083976 Review.
MODOMICS: a database of RNA modification pathways. 2008 update.
Czerwoniec A, Dunin-Horkawicz S, Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Grosjean H, Rother K. Czerwoniec A, et al. Among authors: kasprzak jm. Nucleic Acids Res. 2009 Jan;37(Database issue):D118-21. doi: 10.1093/nar/gkn710. Epub 2008 Oct 14. Nucleic Acids Res. 2009. PMID: 18854352 Free PMC article.
20 results