Gallopin M - Search Results

1

Reference-free transcriptome exploration reveals novel RNAs for prostate cancer diagnosis.

Pinskaya M, Saci Z, Gallopin M, Gabriel M, Nguyen HT, Firlej V, Descrimes M, Rapinat A, Gentien D, Taille A, Londoño-Vallejo A, Allory Y, Gautheret D, Morillon A. Pinskaya M, et al. Among authors: gallopin m. Life Sci Alliance. 2019 Nov 15;2(6):e201900449. doi: 10.26508/lsa.201900449. Print 2019 Dec. Life Sci Alliance. 2019. PMID: 31732695 Free PMC article.

2

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

Audoux J, Philippe N, Chikhi R, Salson M, Gallopin M, Gabriel M, Le Coz J, Drouineau E, Commes T, Gautheret D. Audoux J, et al. Among authors: gallopin m. Genome Biol. 2017 Dec 28;18(1):243. doi: 10.1186/s13059-017-1372-2. Genome Biol. 2017. PMID: 29284518 Free PMC article.

3

Reference-free transcriptome signatures for prostate cancer prognosis.

Nguyen HTN, Xue H, Firlej V, Ponty Y, Gallopin M, Gautheret D. Nguyen HTN, et al. Among authors: gallopin m. BMC Cancer. 2021 Apr 12;21(1):394. doi: 10.1186/s12885-021-08021-1. BMC Cancer. 2021. PMID: 33845808 Free PMC article.

4

The contribution of uncharted RNA sequences to tumor identity in lung adenocarcinoma.

Wang Y, Xue H, Aglave M, Lainé A, Gallopin M, Gautheret D. Wang Y, et al. Among authors: gallopin m. NAR Cancer. 2022 Feb 1;4(1):zcac001. doi: 10.1093/narcan/zcac001. eCollection 2022 Mar. NAR Cancer. 2022. PMID: 35118386 Free PMC article.

5

KaMRaT: a C++ toolkit for k-mer count matrix dimension reduction.

Xue H, Gallopin M, Marchet C, Nguyen HN, Wang Y, Lainé A, Bessiere C, Gautheret D. Xue H, et al. Among authors: gallopin m. Bioinformatics. 2024 Mar 4;40(3):btae090. doi: 10.1093/bioinformatics/btae090. Bioinformatics. 2024. PMID: 38444086 Free PMC article.

6

Additional insights into the organization of transcriptional regulatory modules based on a 3D model of the Saccharomyces cerevisiae genome.

Poinsignon T, Gallopin M, Camadro JM, Poulain P, Lelandais G. Poinsignon T, et al. Among authors: gallopin m. BMC Res Notes. 2022 Feb 19;15(1):67. doi: 10.1186/s13104-022-05940-5. BMC Res Notes. 2022. PMID: 35183229 Free PMC article.

7

Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software.

Decamps C, Privé F, Bacher R, Jost D, Waguet A; HADACA consortium; Houseman EA, Lurie E, Lutsik P, Milosavljevic A, Scherer M, Blum MGB, Richard M. Decamps C, et al. BMC Bioinformatics. 2020 Jan 13;21(1):16. doi: 10.1186/s12859-019-3307-2. BMC Bioinformatics. 2020. PMID: 31931698 Free PMC article.

8

Data-based filtering for replicated high-throughput transcriptome sequencing experiments.

Rau A, Gallopin M, Celeux G, Jaffrézic F. Rau A, et al. Among authors: gallopin m. Bioinformatics. 2013 Sep 1;29(17):2146-52. doi: 10.1093/bioinformatics/btt350. Epub 2013 Jul 2. Bioinformatics. 2013. PMID: 23821648 Free PMC article.

9

A hierarchical poisson log-normal model for network inference from RNA sequencing data.

Gallopin M, Rau A, Jaffrézic F. Gallopin M, et al. PLoS One. 2013 Oct 17;8(10):e77503. doi: 10.1371/journal.pone.0077503. eCollection 2013. PLoS One. 2013. PMID: 24147011 Free PMC article.

10

A model selection criterion for model-based clustering of annotated gene expression data.

Gallopin M, Celeux G, Jaffrézic F, Rau A. Gallopin M, et al. Stat Appl Genet Mol Biol. 2015 Nov;14(5):413-28. doi: 10.1515/sagmb-2014-0095. Stat Appl Genet Mol Biol. 2015. PMID: 26461845 Free article.

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