Segata N - Search Results

1

Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates.

Fehlner-Peach H, Magnabosco C, Raghavan V, Scher JU, Tett A, Cox LM, Gottsegen C, Watters A, Wiltshire-Gordon JD, Segata N, Bonneau R, Littman DR. Fehlner-Peach H, et al. Among authors: segata n. Cell Host Microbe. 2019 Nov 13;26(5):680-690.e5. doi: 10.1016/j.chom.2019.10.013. Cell Host Microbe. 2019. PMID: 31726030 Free PMC article.

2

The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment.

Sczesnak A, Segata N, Qin X, Gevers D, Petrosino JF, Huttenhower C, Littman DR, Ivanov II. Sczesnak A, et al. Among authors: segata n. Cell Host Microbe. 2011 Sep 15;10(3):260-72. doi: 10.1016/j.chom.2011.08.005. Cell Host Microbe. 2011. PMID: 21925113 Free PMC article.

3

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis.

Scher JU, Sczesnak A, Longman RS, Segata N, Ubeda C, Bielski C, Rostron T, Cerundolo V, Pamer EG, Abramson SB, Huttenhower C, Littman DR. Scher JU, et al. Among authors: segata n. Elife. 2013 Nov 5;2:e01202. doi: 10.7554/eLife.01202. Elife. 2013. PMID: 24192039 Free PMC article.

4

Exploring Vertical Transmission of Bifidobacteria from Mother to Child.

Milani C, Mancabelli L, Lugli GA, Duranti S, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Ferretti P, Gorfer V, Tett A, Segata N, van Sinderen D, Ventura M. Milani C, et al. Among authors: segata n. Appl Environ Microbiol. 2015 Oct;81(20):7078-87. doi: 10.1128/AEM.02037-15. Epub 2015 Jul 31. Appl Environ Microbiol. 2015. PMID: 26231653 Free PMC article.

5

MetaPhlAn2 for enhanced metagenomic taxonomic profiling.

Truong DT, Franzosa EA, Tickle TL, Scholz M, Weingart G, Pasolli E, Tett A, Huttenhower C, Segata N. Truong DT, et al. Among authors: segata n. Nat Methods. 2015 Oct;12(10):902-3. doi: 10.1038/nmeth.3589. Nat Methods. 2015. PMID: 26418763 No abstract available.

6

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants.

Ward DV, Scholz M, Zolfo M, Taft DH, Schibler KR, Tett A, Segata N, Morrow AL. Ward DV, et al. Among authors: segata n. Cell Rep. 2016 Mar 29;14(12):2912-24. doi: 10.1016/j.celrep.2016.03.015. Epub 2016 Mar 17. Cell Rep. 2016. PMID: 26997279 Free PMC article.

7

Strain-level microbial epidemiology and population genomics from shotgun metagenomics.

Scholz M, Ward DV, Pasolli E, Tolio T, Zolfo M, Asnicar F, Truong DT, Tett A, Morrow AL, Segata N. Scholz M, et al. Among authors: segata n. Nat Methods. 2016 May;13(5):435-8. doi: 10.1038/nmeth.3802. Epub 2016 Mar 21. Nat Methods. 2016. PMID: 26999001

8

Experimental metagenomics and ribosomal profiling of the human skin microbiome.

Ferretti P, Farina S, Cristofolini M, Girolomoni G, Tett A, Segata N. Ferretti P, et al. Among authors: segata n. Exp Dermatol. 2017 Mar;26(3):211-219. doi: 10.1111/exd.13210. Epub 2017 Jan 20. Exp Dermatol. 2017. PMID: 27623553 Review.

9

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.

Zolfo M, Tett A, Jousson O, Donati C, Segata N. Zolfo M, et al. Among authors: segata n. Nucleic Acids Res. 2017 Jan 25;45(2):e7. doi: 10.1093/nar/gkw837. Epub 2016 Sep 19. Nucleic Acids Res. 2017. PMID: 27651451 Free PMC article.

10

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling.

Asnicar F, Manara S, Zolfo M, Truong DT, Scholz M, Armanini F, Ferretti P, Gorfer V, Pedrotti A, Tett A, Segata N. Asnicar F, et al. Among authors: segata n. mSystems. 2017 Jan 17;2(1):e00164-16. doi: 10.1128/mSystems.00164-16. eCollection 2017 Jan-Feb. mSystems. 2017. PMID: 28144631 Free PMC article.

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