Papin JA - Search Results

1

Genome-Scale Model-Based Identification of Metabolite Indicators for Early Detection of Kidney Toxicity.

Pannala VR, Vinnakota KC, Estes SK, Trenary I, OˈBrien TP, Printz RL, Papin JA, Reifman J, Oyama T, Shiota M, Young JD, Wallqvist A. Pannala VR, et al. Among authors: papin ja. Toxicol Sci. 2020 Feb 1;173(2):293-312. doi: 10.1093/toxsci/kfz228. Toxicol Sci. 2020. PMID: 31722432 Free PMC article.

2

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.

Oberhardt MA, Puchałka J, Fryer KE, Martins dos Santos VA, Papin JA. Oberhardt MA, et al. Among authors: papin ja. J Bacteriol. 2008 Apr;190(8):2790-803. doi: 10.1128/JB.01583-07. Epub 2008 Jan 11. J Bacteriol. 2008. PMID: 18192387 Free PMC article.

3

Applications of genome-scale metabolic reconstructions.

Oberhardt MA, Palsson BØ, Papin JA. Oberhardt MA, et al. Among authors: papin ja. Mol Syst Biol. 2009;5:320. doi: 10.1038/msb.2009.77. Epub 2009 Nov 3. Mol Syst Biol. 2009. PMID: 19888215 Free PMC article. Review.

4

Functional integration of a metabolic network model and expression data without arbitrary thresholding.

Jensen PA, Papin JA. Jensen PA, et al. Among authors: papin ja. Bioinformatics. 2011 Feb 15;27(4):541-7. doi: 10.1093/bioinformatics/btq702. Epub 2010 Dec 20. Bioinformatics. 2011. PMID: 21172910 Free PMC article.

5

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

Oberhardt MA, Puchałka J, Martins dos Santos VA, Papin JA. Oberhardt MA, et al. Among authors: papin ja. PLoS Comput Biol. 2011 Mar;7(3):e1001116. doi: 10.1371/journal.pcbi.1001116. Epub 2011 Mar 31. PLoS Comput Biol. 2011. PMID: 21483480 Free PMC article.

6

Whole-genome metabolic network reconstruction and constraint-based modeling.

Haggart CR, Bartell JA, Saucerman JJ, Papin JA. Haggart CR, et al. Among authors: papin ja. Methods Enzymol. 2011;500:411-33. doi: 10.1016/B978-0-12-385118-5.00021-9. Methods Enzymol. 2011. PMID: 21943909 Free PMC article.

7

A metabolic network approach for the identification and prioritization of antimicrobial drug targets.

Chavali AK, D'Auria KM, Hewlett EL, Pearson RD, Papin JA. Chavali AK, et al. Among authors: papin ja. Trends Microbiol. 2012 Mar;20(3):113-23. doi: 10.1016/j.tim.2011.12.004. Epub 2012 Jan 31. Trends Microbiol. 2012. PMID: 22300758 Free PMC article. Review.

8

Linking genome-scale metabolic modeling and genome annotation.

Blais EM, Chavali AK, Papin JA. Blais EM, et al. Among authors: papin ja. Methods Mol Biol. 2013;985:61-83. doi: 10.1007/978-1-62703-299-5_4. Methods Mol Biol. 2013. PMID: 23417799 Free PMC article.

9

Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions.

Blais EM, Rawls KD, Dougherty BV, Li ZI, Kolling GL, Ye P, Wallqvist A, Papin JA. Blais EM, et al. Among authors: papin ja. Nat Commun. 2017 Feb 8;8:14250. doi: 10.1038/ncomms14250. Nat Commun. 2017. PMID: 28176778 Free PMC article.

10

A simplified metabolic network reconstruction to promote understanding and development of flux balance analysis tools.

Rawls KD, Dougherty BV, Blais EM, Stancliffe E, Kolling GL, Vinnakota K, Pannala VR, Wallqvist A, Papin JA. Rawls KD, et al. Among authors: papin ja. Comput Biol Med. 2019 Feb;105:64-71. doi: 10.1016/j.compbiomed.2018.12.010. Epub 2018 Dec 17. Comput Biol Med. 2019. PMID: 30584952 Free article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

158 results

Search Page

Filters