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Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7.
Hanawa-Suetsugu K, Itoh Y, Ab Fatah M, Nishimura T, Takemura K, Takeshita K, Kubota S, Miyazaki N, Wan Mohamad Noor WNI, Inaba T, Nguyen NTH, Hamada-Nakahara S, Oono-Yakura K, Tachikawa M, Iwasaki K, Kohda D, Yamamoto M, Kitao A, Shimada A, Suetsugu S. Hanawa-Suetsugu K, et al. Among authors: yamamoto m. Nat Commun. 2019 Oct 18;10(1):4763. doi: 10.1038/s41467-019-12738-w. Nat Commun. 2019. PMID: 31628328 Free PMC article.
Curved EFC/F-BAR-domain dimers are joined end to end into a filament for membrane invagination in endocytosis.
Shimada A, Niwa H, Tsujita K, Suetsugu S, Nitta K, Hanawa-Suetsugu K, Akasaka R, Nishino Y, Toyama M, Chen L, Liu ZJ, Wang BC, Yamamoto M, Terada T, Miyazawa A, Tanaka A, Sugano S, Shirouzu M, Nagayama K, Takenawa T, Yokoyama S. Shimada A, et al. Among authors: yamamoto m. Cell. 2007 May 18;129(4):761-72. doi: 10.1016/j.cell.2007.03.040. Cell. 2007. PMID: 17512409 Free article.
Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL.
Hirata K, Shinzawa-Itoh K, Yano N, Takemura S, Kato K, Hatanaka M, Muramoto K, Kawahara T, Tsukihara T, Yamashita E, Tono K, Ueno G, Hikima T, Murakami H, Inubushi Y, Yabashi M, Ishikawa T, Yamamoto M, Ogura T, Sugimoto H, Shen JR, Yoshikawa S, Ago H. Hirata K, et al. Among authors: yamamoto m. Nat Methods. 2014 Jul;11(7):734-6. doi: 10.1038/nmeth.2962. Epub 2014 May 11. Nat Methods. 2014. PMID: 24813624
Structural analysis reveals TLR7 dynamics underlying antagonism.
Tojo S, Zhang Z, Matsui H, Tahara M, Ikeguchi M, Kochi M, Kamada M, Shigematsu H, Tsutsumi A, Adachi N, Shibata T, Yamamoto M, Kikkawa M, Senda T, Isobe Y, Ohto U, Shimizu T. Tojo S, et al. Among authors: yamamoto m. Nat Commun. 2020 Oct 15;11(1):5204. doi: 10.1038/s41467-020-19025-z. Nat Commun. 2020. PMID: 33060576 Free PMC article.
Structure of the bile acid transporter and HBV receptor NTCP.
Asami J, Kimura KT, Fujita-Fujiharu Y, Ishida H, Zhang Z, Nomura Y, Liu K, Uemura T, Sato Y, Ono M, Yamamoto M, Noda T, Shigematsu H, Drew D, Iwata S, Shimizu T, Nomura N, Ohto U. Asami J, et al. Among authors: yamamoto m. Nature. 2022 Jun;606(7916):1021-1026. doi: 10.1038/s41586-022-04845-4. Epub 2022 May 17. Nature. 2022. PMID: 35580629
Dynamic mechanisms of CRISPR interference by Escherichia coli CRISPR-Cas3.
Yoshimi K, Takeshita K, Kodera N, Shibumura S, Yamauchi Y, Omatsu M, Umeda K, Kunihiro Y, Yamamoto M, Mashimo T. Yoshimi K, et al. Among authors: yamamoto m. Nat Commun. 2022 Aug 30;13(1):4917. doi: 10.1038/s41467-022-32618-0. Nat Commun. 2022. PMID: 36042215 Free PMC article.
Single-shot three-dimensional structure determination of nanocrystals with femtosecond X-ray free-electron laser pulses.
Xu R, Jiang H, Song C, Rodriguez JA, Huang Z, Chen CC, Nam D, Park J, Gallagher-Jones M, Kim S, Kim S, Suzuki A, Takayama Y, Oroguchi T, Takahashi Y, Fan J, Zou Y, Hatsui T, Inubushi Y, Kameshima T, Yonekura K, Tono K, Togashi T, Sato T, Yamamoto M, Nakasako M, Yabashi M, Ishikawa T, Miao J. Xu R, et al. Among authors: yamamoto m. Nat Commun. 2014 Jun 5;5:4061. doi: 10.1038/ncomms5061. Nat Commun. 2014. PMID: 24898682 Free article.
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