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SEAweb: the small RNA Expression Atlas web application.
Rahman RU, Liebhoff AM, Bansal V, Fiosins M, Rajput A, Sattar A, Magruder DS, Madan S, Sun T, Gautam A, Heins S, Liwinski T, Bethune J, Trenkwalder C, Fluck J, Mollenhauer B, Bonn S. Rahman RU, et al. Among authors: bonn s. Nucleic Acids Res. 2020 Jan 8;48(D1):D204-D219. doi: 10.1093/nar/gkz869. Nucleic Acids Res. 2020. PMID: 31598718 Free PMC article.
Temporal change of DNA methylation subclasses between matched newly diagnosed and recurrent glioblastoma.
Drexler R, Khatri R, Schüller U, Eckhardt A, Ryba A, Sauvigny T, Dührsen L, Mohme M, Ricklefs T, Bode H, Hausmann F, Huber TB, Bonn S, Voß H, Neumann JE, Silverbush D, Hovestadt V, Suvà ML, Lamszus K, Gempt J, Westphal M, Heiland DH, Hänzelmann S, Ricklefs FL. Drexler R, et al. Among authors: bonn s. Acta Neuropathol. 2024 Jan 20;147(1):21. doi: 10.1007/s00401-023-02677-8. Acta Neuropathol. 2024. PMID: 38244080 Free PMC article.
Targeting T cell plasticity in kidney and gut inflammation by pooled single-cell CRISPR screening.
Enk LUB, Hellmig M, Riecken K, Kilian C, Datlinger P, Jauch-Speer SL, Neben T, Sultana Z, Sivayoganathan V, Borchers A, Paust HJ, Zhao Y, Asada N, Liu S, Agalioti T, Pelczar P, Wiech T, Bock C, Huber TB, Huber S, Bonn S, Gagliani N, Fehse B, Panzer U, Krebs CF. Enk LUB, et al. Among authors: bonn s. Sci Immunol. 2024 Jun 14;9(96):eadd6774. doi: 10.1126/sciimmunol.add6774. Epub 2024 Jun 14. Sci Immunol. 2024. PMID: 38875317
Robust, credible, and interpretable AI-based histopathological prostate cancer grading.
Westhaeusser F, Fuhlert P, Dietrich E, Lennartz M, Khatri R, Kaiser N, Röbeck P, Bülow R, von Stillfried S, Witte A, Ladjevardi S, Drotte A, Severgardh P, Baumbach J, Puelles VG, Häggman M, Brehler M, Boor P, Walhagen P, Dragomir A, Busch C, Graefen M, Bengtsson E, Sauter G, Zimmermann M, Bonn S. Westhaeusser F, et al. Among authors: bonn s. medRxiv [Preprint]. 2024 Jul 10:2024.07.09.24310082. doi: 10.1101/2024.07.09.24310082. medRxiv. 2024. PMID: 39040171 Free PMC article. Preprint.
Oasis: online analysis of small RNA deep sequencing data.
Capece V, Garcia Vizcaino JC, Vidal R, Rahman RU, Pena Centeno T, Shomroni O, Suberviola I, Fischer A, Bonn S. Capece V, et al. Among authors: bonn s. Bioinformatics. 2015 Jul 1;31(13):2205-7. doi: 10.1093/bioinformatics/btv113. Epub 2015 Feb 19. Bioinformatics. 2015. PMID: 25701573 Free PMC article.
DNA methylation changes in plasticity genes accompany the formation and maintenance of memory.
Halder R, Hennion M, Vidal RO, Shomroni O, Rahman RU, Rajput A, Centeno TP, van Bebber F, Capece V, Garcia Vizcaino JC, Schuetz AL, Burkhardt S, Benito E, Navarro Sala M, Javan SB, Haass C, Schmid B, Fischer A, Bonn S. Halder R, et al. Among authors: bonn s. Nat Neurosci. 2016 Jan;19(1):102-10. doi: 10.1038/nn.4194. Epub 2015 Dec 14. Nat Neurosci. 2016. PMID: 26656643
The landscape of human mutually exclusive splicing.
Hatje K, Rahman RU, Vidal RO, Simm D, Hammesfahr B, Bansal V, Rajput A, Mickael ME, Sun T, Bonn S, Kollmar M. Hatje K, et al. Among authors: bonn s. Mol Syst Biol. 2017 Dec 14;13(12):959. doi: 10.15252/msb.20177728. Mol Syst Biol. 2017. PMID: 29242366 Free PMC article.
171 results