Ma Q - Search Results

1

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data.

Xie J, Ma A, Zhang Y, Liu B, Cao S, Wang C, Xu J, Zhang C, Ma Q. Xie J, et al. Among authors: ma a, ma q. Bioinformatics. 2020 Feb 15;36(4):1143-1149. doi: 10.1093/bioinformatics/btz692. Bioinformatics. 2020. PMID: 31503285 Free PMC article.

2

A new framework for identifying cis-regulatory motifs in prokaryotes.

Li G, Liu B, Ma Q, Xu Y. Li G, et al. Among authors: ma q. Nucleic Acids Res. 2011 Apr;39(7):e42. doi: 10.1093/nar/gkq948. Epub 2010 Dec 11. Nucleic Acids Res. 2011. PMID: 21149261 Free PMC article.

3

An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale.

Ma Q, Liu B, Zhou C, Yin Y, Li G, Xu Y. Ma Q, et al. Bioinformatics. 2013 Sep 15;29(18):2261-8. doi: 10.1093/bioinformatics/btt397. Epub 2013 Jul 10. Bioinformatics. 2013. PMID: 23846744

4

DMINDA: an integrated web server for DNA motif identification and analyses.

Ma Q, Zhang H, Mao X, Zhou C, Liu B, Chen X, Xu Y. Ma Q, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W12-9. doi: 10.1093/nar/gku315. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753419 Free PMC article.

5

Comprehensive characterization of the genomic alterations in human gastric cancer.

Cui J, Yin Y, Ma Q, Wang G, Olman V, Zhang Y, Chou WC, Hong CS, Zhang C, Cao S, Mao X, Li Y, Qin S, Zhao S, Jiang J, Hastings P, Li F, Xu Y. Cui J, et al. Among authors: ma q. Int J Cancer. 2015 Jul 1;137(1):86-95. doi: 10.1002/ijc.29352. Epub 2014 Dec 3. Int J Cancer. 2015. PMID: 25422082 Free PMC article.

6

Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum.

Chou WC, Ma Q, Yang S, Cao S, Klingeman DM, Brown SD, Xu Y. Chou WC, et al. Among authors: ma q. Nucleic Acids Res. 2015 May 26;43(10):e67. doi: 10.1093/nar/gkv177. Epub 2015 Mar 12. Nucleic Acids Res. 2015. PMID: 25765651 Free PMC article.

7

Revisiting operons: an analysis of the landscape of transcriptional units in E. coli.

Mao X, Ma Q, Liu B, Chen X, Zhang H, Xu Y. Mao X, et al. Among authors: ma q. BMC Bioinformatics. 2015 Nov 4;16:356. doi: 10.1186/s12859-015-0805-8. BMC Bioinformatics. 2015. PMID: 26538447 Free PMC article.

8

Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses.

Liu B, Zhou C, Li G, Zhang H, Zeng E, Liu Q, Ma Q. Liu B, et al. Among authors: ma q. Sci Rep. 2016 Mar 15;6:23030. doi: 10.1038/srep23030. Sci Rep. 2016. PMID: 26975728 Free PMC article.

9

An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.

Liu B, Zhang H, Zhou C, Li G, Fennell A, Wang G, Kang Y, Liu Q, Ma Q. Liu B, et al. Among authors: ma q. BMC Genomics. 2016 Aug 9;17:578. doi: 10.1186/s12864-016-2982-x. BMC Genomics. 2016. PMID: 27507169 Free PMC article.

10

RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.

Li Y, Shi X, Liang Y, Xie J, Zhang Y, Ma Q. Li Y, et al. Among authors: ma q. BMC Bioinformatics. 2017 Jan 21;18(1):51. doi: 10.1186/s12859-017-1481-7. BMC Bioinformatics. 2017. PMID: 28109252 Free PMC article.

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