Anders S - Search Results

1

EpiSmokEr: a robust classifier to determine smoking status from DNA methylation data.

Bollepalli S, Korhonen T, Kaprio J, Anders S, Ollikainen M. Bollepalli S, et al. Among authors: anders s. Epigenomics. 2019 Oct;11(13):1469-1486. doi: 10.2217/epi-2019-0206. Epub 2019 Aug 30. Epigenomics. 2019. PMID: 31466478

2

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor.

Anders S, McCarthy DJ, Chen Y, Okoniewski M, Smyth GK, Huber W, Robinson MD. Anders S, et al. Nat Protoc. 2013 Sep;8(9):1765-86. doi: 10.1038/nprot.2013.099. Epub 2013 Aug 22. Nat Protoc. 2013. PMID: 23975260

3

Focused multidimensional scaling: interactive visualization for exploration of high-dimensional data.

Urpa LM, Anders S. Urpa LM, et al. Among authors: anders s. BMC Bioinformatics. 2019 May 2;20(1):221. doi: 10.1186/s12859-019-2780-y. BMC Bioinformatics. 2019. PMID: 31046657 Free PMC article.

4

Detecting differential usage of exons from RNA-seq data.

Anders S, Reyes A, Huber W. Anders S, et al. Genome Res. 2012 Oct;22(10):2008-17. doi: 10.1101/gr.133744.111. Epub 2012 Jun 21. Genome Res. 2012. PMID: 22722343 Free PMC article.

5

A computational method for detection of ligand-binding proteins from dose range thermal proteome profiles.

Kurzawa N, Becher I, Sridharan S, Franken H, Mateus A, Anders S, Bantscheff M, Huber W, Savitski MM. Kurzawa N, et al. Among authors: anders s. Nat Commun. 2020 Nov 13;11(1):5783. doi: 10.1038/s41467-020-19529-8. Nat Commun. 2020. PMID: 33188197 Free PMC article.

6

Exploring dimension-reduced embeddings with Sleepwalk.

Ovchinnikova S, Anders S. Ovchinnikova S, et al. Among authors: anders s. Genome Res. 2020 May;30(5):749-756. doi: 10.1101/gr.251447.119. Epub 2020 May 19. Genome Res. 2020. PMID: 32430339 Free PMC article.

7

HTSeq--a Python framework to work with high-throughput sequencing data.

Anders S, Pyl PT, Huber W. Anders S, et al. Bioinformatics. 2015 Jan 15;31(2):166-9. doi: 10.1093/bioinformatics/btu638. Epub 2014 Sep 25. Bioinformatics. 2015. PMID: 25260700 Free PMC article.

8

Genome-wide analysis of mRNA decay patterns during early Drosophila development.

Thomsen S, Anders S, Janga SC, Huber W, Alonso CR. Thomsen S, et al. Among authors: anders s. Genome Biol. 2010;11(9):R93. doi: 10.1186/gb-2010-11-9-r93. Epub 2010 Sep 21. Genome Biol. 2010. PMID: 20858238 Free PMC article.

9

Differential expression analysis for sequence count data.

Anders S, Huber W. Anders S, et al. Genome Biol. 2010;11(10):R106. doi: 10.1186/gb-2010-11-10-r106. Epub 2010 Oct 27. Genome Biol. 2010. PMID: 20979621 Free PMC article.

10

Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions.

Schlattl A, Anders S, Waszak SM, Huber W, Korbel JO. Schlattl A, et al. Among authors: anders s. Genome Res. 2011 Dec;21(12):2004-13. doi: 10.1101/gr.122614.111. Epub 2011 Aug 23. Genome Res. 2011. PMID: 21862627 Free PMC article.

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