Hiratani I - Search Results

1

The Eleanor ncRNAs activate the topological domain of the ESR1 locus to balance against apoptosis.

Abdalla MOA, Yamamoto T, Maehara K, Nogami J, Ohkawa Y, Miura H, Poonperm R, Hiratani I, Nakayama H, Nakao M, Saitoh N. Abdalla MOA, et al. Among authors: hiratani i. Nat Commun. 2019 Aug 22;10(1):3778. doi: 10.1038/s41467-019-11378-4. Nat Commun. 2019. PMID: 31439835 Free PMC article.

2

Srf destabilizes cellular identity by suppressing cell-type-specific gene expression programs.

Ikeda T, Hikichi T, Miura H, Shibata H, Mitsunaga K, Yamada Y, Woltjen K, Miyamoto K, Hiratani I, Yamada Y, Hotta A, Yamamoto T, Okita K, Masui S. Ikeda T, et al. Among authors: hiratani i. Nat Commun. 2018 Apr 11;9(1):1387. doi: 10.1038/s41467-018-03748-1. Nat Commun. 2018. PMID: 29643333 Free PMC article.

3

Practical Analysis of Hi-C Data: Generating A/B Compartment Profiles.

Miura H, Poonperm R, Takahashi S, Hiratani I. Miura H, et al. Among authors: hiratani i. Methods Mol Biol. 2018;1861:221-245. doi: 10.1007/978-1-4939-8766-5_16. Methods Mol Biol. 2018. PMID: 30218370

4

Genome-wide stability of the DNA replication program in single mammalian cells.

Takahashi S, Miura H, Shibata T, Nagao K, Okumura K, Ogata M, Obuse C, Takebayashi SI, Hiratani I. Takahashi S, et al. Among authors: hiratani i. Nat Genet. 2019 Mar;51(3):529-540. doi: 10.1038/s41588-019-0347-5. Epub 2019 Feb 25. Nat Genet. 2019. PMID: 30804559

5

Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization.

Miura H, Takahashi S, Poonperm R, Tanigawa A, Takebayashi SI, Hiratani I. Miura H, et al. Among authors: hiratani i. Nat Genet. 2019 Sep;51(9):1356-1368. doi: 10.1038/s41588-019-0474-z. Epub 2019 Aug 12. Nat Genet. 2019. PMID: 31406346

6

Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?

Kadota M, Nishimura O, Miura H, Tanaka K, Hiratani I, Kuraku S. Kadota M, et al. Among authors: hiratani i. Gigascience. 2020 Jan 1;9(1):giz158. doi: 10.1093/gigascience/giz158. Gigascience. 2020. PMID: 31919520 Free PMC article.

7

Microrheology for Hi-C Data Reveals the Spectrum of the Dynamic 3D Genome Organization.

Shinkai S, Sugawara T, Miura H, Hiratani I, Onami S. Shinkai S, et al. Among authors: hiratani i. Biophys J. 2020 May 5;118(9):2220-2228. doi: 10.1016/j.bpj.2020.02.020. Epub 2020 Mar 3. Biophys J. 2020. PMID: 32191860 Free PMC article.

8

Mapping replication timing domains genome wide in single mammalian cells with single-cell DNA replication sequencing.

Miura H, Takahashi S, Shibata T, Nagao K, Obuse C, Okumura K, Ogata M, Hiratani I, Takebayashi SI. Miura H, et al. Among authors: hiratani i. Nat Protoc. 2020 Dec;15(12):4058-4100. doi: 10.1038/s41596-020-0378-5. Epub 2020 Nov 23. Nat Protoc. 2020. PMID: 33230331

9

Formation of a multi-layered 3-dimensional structure of the heterochromatin compartment during early mammalian development.

Poonperm R, Hiratani I. Poonperm R, et al. Among authors: hiratani i. Dev Growth Differ. 2021 Jan;63(1):5-17. doi: 10.1111/dgd.12709. Epub 2021 Feb 3. Dev Growth Differ. 2021. PMID: 33491197 Review.

10

Regulation of mammalian 3D genome organization and histone H3K9 dimethylation by H3K9 methyltransferases.

Fukuda K, Shimura C, Miura H, Tanigawa A, Suzuki T, Dohmae N, Hiratani I, Shinkai Y. Fukuda K, et al. Among authors: hiratani i. Commun Biol. 2021 May 13;4(1):571. doi: 10.1038/s42003-021-02089-y. Commun Biol. 2021. PMID: 33986449 Free PMC article.

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