Arkin AP - Search Results

1

Structural basis for AcrVA4 inhibition of specific CRISPR-Cas12a.

Knott GJ, Cress BF, Liu JJ, Thornton BW, Lew RJ, Al-Shayeb B, Rosenberg DJ, Hammel M, Adler BA, Lobba MJ, Xu M, Arkin AP, Fellmann C, Doudna JA. Knott GJ, et al. Among authors: arkin ap. Elife. 2019 Aug 9;8:e49110. doi: 10.7554/eLife.49110. Elife. 2019. PMID: 31397669 Free PMC article.

2

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).

Lucks JB, Mortimer SA, Trapnell C, Luo S, Aviran S, Schroth GP, Pachter L, Doudna JA, Arkin AP. Lucks JB, et al. Among authors: arkin ap. Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11063-8. doi: 10.1073/pnas.1106501108. Epub 2011 Jun 3. Proc Natl Acad Sci U S A. 2011. PMID: 21642531 Free PMC article.

3

Modeling and automation of sequencing-based characterization of RNA structure.

Aviran S, Trapnell C, Lucks JB, Mortimer SA, Luo S, Schroth GP, Doudna JA, Arkin AP, Pachter L. Aviran S, et al. Among authors: arkin ap. Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11069-74. doi: 10.1073/pnas.1106541108. Epub 2011 Jun 3. Proc Natl Acad Sci U S A. 2011. PMID: 21642536 Free PMC article.

4

RNA processing enables predictable programming of gene expression.

Qi L, Haurwitz RE, Shao W, Doudna JA, Arkin AP. Qi L, et al. Among authors: arkin ap. Nat Biotechnol. 2012 Oct;30(10):1002-6. doi: 10.1038/nbt.2355. Epub 2012 Sep 16. Nat Biotechnol. 2012. PMID: 22983090

5

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression.

Qi LS, Larson MH, Gilbert LA, Doudna JA, Weissman JS, Arkin AP, Lim WA. Qi LS, et al. Among authors: arkin ap. Cell. 2013 Feb 28;152(5):1173-83. doi: 10.1016/j.cell.2013.02.022. Cell. 2013. PMID: 23452860 Free PMC article.

6

Selection of chromosomal DNA libraries using a multiplex CRISPR system.

Ryan OW, Skerker JM, Maurer MJ, Li X, Tsai JC, Poddar S, Lee ME, DeLoache W, Dueber JE, Arkin AP, Cate JH. Ryan OW, et al. Among authors: arkin ap. Elife. 2014 Aug 19;3:e03703. doi: 10.7554/eLife.03703. Elife. 2014. PMID: 25139909 Free PMC article.

7

Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides.

Coradetti ST, Pinel D, Geiselman GM, Ito M, Mondo SJ, Reilly MC, Cheng YF, Bauer S, Grigoriev IV, Gladden JM, Simmons BA, Brem RB, Arkin AP, Skerker JM. Coradetti ST, et al. Among authors: arkin ap. Elife. 2018 Mar 9;7:e32110. doi: 10.7554/eLife.32110. Elife. 2018. PMID: 29521624 Free PMC article.

8

CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification.

Oakes BL, Fellmann C, Rishi H, Taylor KL, Ren SM, Nadler DC, Yokoo R, Arkin AP, Doudna JA, Savage DF. Oakes BL, et al. Among authors: arkin ap. Cell. 2019 Jan 10;176(1-2):254-267.e16. doi: 10.1016/j.cell.2018.11.052. Cell. 2019. PMID: 30633905 Free PMC article.

9

A versatile platform strain for high-fidelity multiplex genome editing.

Egbert RG, Rishi HS, Adler BA, McCormick DM, Toro E, Gill RT, Arkin AP. Egbert RG, et al. Among authors: arkin ap. Nucleic Acids Res. 2019 Apr 8;47(6):3244-3256. doi: 10.1093/nar/gkz085. Nucleic Acids Res. 2019. PMID: 30788501 Free PMC article.

10

High-throughput mapping of the phage resistance landscape in E. coli.

Mutalik VK, Adler BA, Rishi HS, Piya D, Zhong C, Koskella B, Kutter EM, Calendar R, Novichkov PS, Price MN, Deutschbauer AM, Arkin AP. Mutalik VK, et al. Among authors: arkin ap. PLoS Biol. 2020 Oct 13;18(10):e3000877. doi: 10.1371/journal.pbio.3000877. eCollection 2020 Oct. PLoS Biol. 2020. PMID: 33048924 Free PMC article.

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