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Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation.
Bickhart DM, Watson M, Koren S, Panke-Buisse K, Cersosimo LM, Press MO, Van Tassell CP, Van Kessel JAS, Haley BJ, Kim SW, Heiner C, Suen G, Bakshy K, Liachko I, Sullivan ST, Myer PR, Ghurye J, Pop M, Weimer PJ, Phillippy AM, Smith TPL. Bickhart DM, et al. Among authors: van tassell cp, van kessel jas. Genome Biol. 2019 Aug 2;20(1):153. doi: 10.1186/s13059-019-1760-x. Genome Biol. 2019. PMID: 31375138 Free PMC article.
Characterization of 954 bovine full-CDS cDNA sequences.
Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP. Harhay GP, et al. Among authors: van tassell cp. BMC Genomics. 2005 Nov 23;6:166. doi: 10.1186/1471-2164-6-166. BMC Genomics. 2005. PMID: 16305752 Free PMC article.
A physical map of the bovine genome.
Snelling WM, Chiu R, Schein JE, Hobbs M, Abbey CA, Adelson DL, Aerts J, Bennett GL, Bosdet IE, Boussaha M, Brauning R, Caetano AR, Costa MM, Crawford AM, Dalrymple BP, Eggen A, Everts-van der Wind A, Floriot S, Gautier M, Gill CA, Green RD, Holt R, Jann O, Jones SJ, Kappes SM, Keele JW, de Jong PJ, Larkin DM, Lewin HA, McEwan JC, McKay S, Marra MA, Mathewson CA, Matukumalli LK, Moore SS, Murdoch B, Nicholas FW, Osoegawa K, Roy A, Salih H, Schibler L, Schnabel RD, Silveri L, Skow LC, Smith TP, Sonstegard TS, Taylor JF, Tellam R, Van Tassell CP, Williams JL, Womack JE, Wye NH, Yang G, Zhao S; International Bovine BAC Mapping Consortium. Snelling WM, et al. Among authors: van tassell cp. Genome Biol. 2007;8(8):R165. doi: 10.1186/gb-2007-8-8-r165. Genome Biol. 2007. PMID: 17697342 Free PMC article.
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. Zimin AV, et al. Among authors: van tassell cp. Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24. Genome Biol. 2009. PMID: 19393038 Free PMC article.
An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation.
Harhay GP, Smith TP, Alexander LJ, Haudenschild CD, Keele JW, Matukumalli LK, Schroeder SG, Van Tassell CP, Gresham CR, Bridges SM, Burgess SC, Sonstegard TS. Harhay GP, et al. Among authors: van tassell cp. Genome Biol. 2010;11(10):R102. doi: 10.1186/gb-2010-11-10-r102. Epub 2010 Oct 20. Genome Biol. 2010. PMID: 20961407 Free PMC article.
Genomic characteristics of cattle copy number variations.
Hou Y, Liu GE, Bickhart DM, Cardone MF, Wang K, Kim ES, Matukumalli LK, Ventura M, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP. Hou Y, et al. Among authors: van tassell cp. BMC Genomics. 2011 Feb 23;12:127. doi: 10.1186/1471-2164-12-127. BMC Genomics. 2011. PMID: 21345189 Free PMC article.
Copy number variation of individual cattle genomes using next-generation sequencing.
Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, Song J, Schnabel RD, Ventura M, Taylor JF, Garcia JF, Van Tassell CP, Sonstegard TS, Eichler EE, Liu GE. Bickhart DM, et al. Among authors: van tassell cp. Genome Res. 2012 Apr;22(4):778-90. doi: 10.1101/gr.133967.111. Epub 2012 Feb 2. Genome Res. 2012. PMID: 22300768 Free PMC article.
193 results