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Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.
Rule A, Birmingham A, Zuniga C, Altintas I, Huang SC, Knight R, Moshiri N, Nguyen MH, Rosenthal SB, Pérez F, Rose PW. Rule A, et al. Among authors: perez f. PLoS Comput Biol. 2019 Jul 25;15(7):e1007007. doi: 10.1371/journal.pcbi.1007007. eCollection 2019 Jul. PLoS Comput Biol. 2019. PMID: 31344036 Free PMC article. No abstract available.
Collaborative cloud-enabled tools allow rapid, reproducible biological insights.
Ragan-Kelley B, Walters WA, McDonald D, Riley J, Granger BE, Gonzalez A, Knight R, Perez F, Caporaso JG. Ragan-Kelley B, et al. Among authors: perez f. ISME J. 2013 Mar;7(3):461-4. doi: 10.1038/ismej.2012.123. Epub 2012 Oct 25. ISME J. 2013. PMID: 23096404 Free PMC article. No abstract available.
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Arkin AP, Cottingham RW, Henry CS, Harris NL, Stevens RL, Maslov S, Dehal P, Ware D, Perez F, Canon S, Sneddon MW, Henderson ML, Riehl WJ, Murphy-Olson D, Chan SY, Kamimura RT, Kumari S, Drake MM, Brettin TS, Glass EM, Chivian D, Gunter D, Weston DJ, Allen BH, Baumohl J, Best AA, Bowen B, Brenner SE, Bun CC, Chandonia JM, Chia JM, Colasanti R, Conrad N, Davis JJ, Davison BH, DeJongh M, Devoid S, Dietrich E, Dubchak I, Edirisinghe JN, Fang G, Faria JP, Frybarger PM, Gerlach W, Gerstein M, Greiner A, Gurtowski J, Haun HL, He F, Jain R, Joachimiak MP, Keegan KP, Kondo S, Kumar V, Land ML, Meyer F, Mills M, Novichkov PS, Oh T, Olsen GJ, Olson R, Parrello B, Pasternak S, Pearson E, Poon SS, Price GA, Ramakrishnan S, Ranjan P, Ronald PC, Schatz MC, Seaver SMD, Shukla M, Sutormin RA, Syed MH, Thomason J, Tintle NL, Wang D, Xia F, Yoo H, Yoo S, Yu D. Arkin AP, et al. Among authors: perez f. Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163. Nat Biotechnol. 2018. PMID: 29979655 Free PMC article. No abstract available.
Feasibility of a Low-Intensity Intervention to Influence Antibiotic Prescribing Rates Use in Outpatient Settings: A Cluster Randomized Controlled Clinical Trial.
Bej TA, Wilson BM, Akpoji UC, Mongilardi N, Chengsupanimit TT, Song S, Kowal C, Stryczek KC, Hearns R, Honsberger M, Wilkerson TL, Firestone C, Subramaniam S, Stevenson L, Ball SL, Jump RLP, Perez F. Bej TA, et al. Among authors: perez f. Open Forum Infect Dis. 2024 Dec 16;12(1):ofae725. doi: 10.1093/ofid/ofae725. eCollection 2025 Jan. Open Forum Infect Dis. 2024. PMID: 39758744 Free PMC article. Clinical Trial.
Correction: Sebro et al. Implementation of Antigen-Based Diagnostic Assays for Detection of Histoplasmosis and Cryptococcosis among Patients with Advanced HIV in Trinidad and Tobago: A Cross-Sectional Study. J. Fungi 2024, 10, 695.
Sebro A, Edwards J, Sued O, Lavia LO, Elder T, Edwards RJ, Akpaka PE, Ram-Bhola N, Morton-Williams Bynoe R, Caro-Vega Y, John I, Perez F. Sebro A, et al. Among authors: perez f. J Fungi (Basel). 2024 Nov 21;10(12):806. doi: 10.3390/jof10120806. J Fungi (Basel). 2024. PMID: 39728391 Free PMC article.
Barriers and facilitators for preventing mother-to-child transmission of Trypanosoma cruzi and hepatitis B in the Gran Chaco region: a qualitative analysis using the consolidated framework for implementation research (CFIR).
Takahashi Y, Avila S, Correa S, Cardone K, Fernández M, Crudo F, Sato M, Aiga H, Hirayama K, Perez F, Periago MV. Takahashi Y, et al. Among authors: perez f. BMC Prim Care. 2024 Dec 19;25(1):430. doi: 10.1186/s12875-024-02683-z. BMC Prim Care. 2024. PMID: 39701994 Free PMC article.
1,343 results