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Page 1
Characterization of Transcriptional Regulatory Networks that Promote and Restrict Identities and Functions of Intestinal Innate Lymphoid Cells.
Pokrovskii M, Hall JA, Ochayon DE, Yi R, Chaimowitz NS, Seelamneni H, Carriero N, Watters A, Waggoner SN, Littman DR, Bonneau R, Miraldi ER. Pokrovskii M, et al. Among authors: watters a. Immunity. 2019 Jul 16;51(1):185-197.e6. doi: 10.1016/j.immuni.2019.06.001. Epub 2019 Jul 2. Immunity. 2019. PMID: 31278058 Free PMC article.
Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis.
Maniatis S, Äijö T, Vickovic S, Braine C, Kang K, Mollbrink A, Fagegaltier D, Andrusivová Ž, Saarenpää S, Saiz-Castro G, Cuevas M, Watters A, Lundeberg J, Bonneau R, Phatnani H. Maniatis S, et al. Among authors: watters a. Science. 2019 Apr 5;364(6435):89-93. doi: 10.1126/science.aav9776. Science. 2019. PMID: 30948552
Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates.
Fehlner-Peach H, Magnabosco C, Raghavan V, Scher JU, Tett A, Cox LM, Gottsegen C, Watters A, Wiltshire-Gordon JD, Segata N, Bonneau R, Littman DR. Fehlner-Peach H, et al. Among authors: watters a. Cell Host Microbe. 2019 Nov 13;26(5):680-690.e5. doi: 10.1016/j.chom.2019.10.013. Cell Host Microbe. 2019. PMID: 31726030 Free PMC article.
A Comprehensive Map of the Monocyte-Derived Dendritic Cell Transcriptional Network Engaged upon Innate Sensing of HIV.
Johnson JS, De Veaux N, Rives AW, Lahaye X, Lucas SY, Perot BP, Luka M, Garcia-Paredes V, Amon LM, Watters A, Abdessalem G, Aderem A, Manel N, Littman DR, Bonneau R, Ménager MM. Johnson JS, et al. Among authors: watters a. Cell Rep. 2020 Jan 21;30(3):914-931.e9. doi: 10.1016/j.celrep.2019.12.054. Cell Rep. 2020. PMID: 31968263 Free PMC article.
High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0.
Skok Gibbs C, Jackson CA, Saldi GA, Tjärnberg A, Shah A, Watters A, De Veaux N, Tchourine K, Yi R, Hamamsy T, Castro DM, Carriero N, Gorissen BL, Gresham D, Miraldi ER, Bonneau R. Skok Gibbs C, et al. Among authors: watters a. Bioinformatics. 2022 Apr 28;38(9):2519-2528. doi: 10.1093/bioinformatics/btac117. Bioinformatics. 2022. PMID: 35188184 Free PMC article.
Learning representations of microbe-metabolite interactions.
Morton JT, Aksenov AA, Nothias LF, Foulds JR, Quinn RA, Badri MH, Swenson TL, Van Goethem MW, Northen TR, Vazquez-Baeza Y, Wang M, Bokulich NA, Watters A, Song SJ, Bonneau R, Dorrestein PC, Knight R. Morton JT, et al. Among authors: watters a. Nat Methods. 2019 Dec;16(12):1306-1314. doi: 10.1038/s41592-019-0616-3. Epub 2019 Nov 4. Nat Methods. 2019. PMID: 31686038 Free PMC article.
Reply to: Examining microbe-metabolite correlations by linear methods.
Morton JT, McDonald D, Aksenov AA, Nothias LF, Foulds JR, Quinn RA, Badri MH, Swenson TL, Van Goethem MW, Northen TR, Vazquez-Baeza Y, Wang M, Bokulich NA, Watters A, Song SJ, Bonneau R, Dorrestein PC, Knight R. Morton JT, et al. Among authors: watters a. Nat Methods. 2021 Jan;18(1):40-41. doi: 10.1038/s41592-020-01007-0. Epub 2021 Jan 4. Nat Methods. 2021. PMID: 33398188 No abstract available.
Spatial transcriptional mapping of the human nephrogenic program.
Lindström NO, Sealfon R, Chen X, Parvez RK, Ransick A, De Sena Brandine G, Guo J, Hill B, Tran T, Kim AD, Zhou J, Tadych A, Watters A, Wong A, Lovero E, Grubbs BH, Thornton ME, McMahon JA, Smith AD, Ruffins SW, Armit C, Troyanskaya OG, McMahon AP. Lindström NO, et al. Among authors: watters a. Dev Cell. 2021 Aug 23;56(16):2381-2398.e6. doi: 10.1016/j.devcel.2021.07.017. Dev Cell. 2021. PMID: 34428401 Free PMC article.
182 results