Beaudoin JD - Search Results

1

Genome wide analysis of 3' UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish.

Vejnar CE, Abdel Messih M, Takacs CM, Yartseva V, Oikonomou P, Christiano R, Stoeckius M, Lau S, Lee MT, Beaudoin JD, Musaev D, Darwich-Codore H, Walther TC, Tavazoie S, Cifuentes D, Giraldez AJ. Vejnar CE, et al. Among authors: beaudoin jd. Genome Res. 2019 Jul;29(7):1100-1114. doi: 10.1101/gr.245159.118. Epub 2019 Jun 21. Genome Res. 2019. PMID: 31227602 Free PMC article.

2

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.

Moreno-Mateos MA, Vejnar CE, Beaudoin JD, Fernandez JP, Mis EK, Khokha MK, Giraldez AJ. Moreno-Mateos MA, et al. Among authors: beaudoin jd. Nat Methods. 2015 Oct;12(10):982-8. doi: 10.1038/nmeth.3543. Epub 2015 Aug 31. Nat Methods. 2015. PMID: 26322839 Free PMC article.

3

Analyses of mRNA structure dynamics identify embryonic gene regulatory programs.

Beaudoin JD, Novoa EM, Vejnar CE, Yartseva V, Takacs CM, Kellis M, Giraldez AJ. Beaudoin JD, et al. Nat Struct Mol Biol. 2018 Aug;25(8):677-686. doi: 10.1038/s41594-018-0091-z. Epub 2018 Jul 30. Nat Struct Mol Biol. 2018. PMID: 30061596 Free PMC article.

4

Brd4 and P300 Confer Transcriptional Competency during Zygotic Genome Activation.

Chan SH, Tang Y, Miao L, Darwich-Codore H, Vejnar CE, Beaudoin JD, Musaev D, Fernandez JP, Benitez MDJ, Bazzini AA, Moreno-Mateos MA, Giraldez AJ. Chan SH, et al. Among authors: beaudoin jd. Dev Cell. 2019 Jun 17;49(6):867-881.e8. doi: 10.1016/j.devcel.2019.05.037. Dev Cell. 2019. PMID: 31211993 Free PMC article.

5

A Functional Non-coding RNA Is Produced from xbp-1 mRNA.

Liu X, Beaudoin JD, Davison CA, Kosmaczewski SG, Meyer BI, Giraldez AJ, Hammarlund M. Liu X, et al. Among authors: beaudoin jd. Neuron. 2020 Sep 9;107(5):854-863.e6. doi: 10.1016/j.neuron.2020.06.015. Epub 2020 Jul 7. Neuron. 2020. PMID: 32640191 Free PMC article.

6

Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing.

Begik O, Diensthuber G, Liu H, Delgado-Tejedor A, Kontur C, Niazi AM, Valen E, Giraldez AJ, Beaudoin JD, Mattick JS, Novoa EM. Begik O, et al. Among authors: beaudoin jd. Nat Methods. 2023 Jan;20(1):75-85. doi: 10.1038/s41592-022-01714-w. Epub 2022 Dec 19. Nat Methods. 2023. PMID: 36536091 Free PMC article.

7

NaP-TRAP reveals the regulatory grammar in 5'UTR-mediated translation regulation during zebrafish development.

Strayer EC, Krishna S, Lee H, Vejnar C, Neuenkirchen N, Gupta A, Beaudoin JD, Giraldez AJ. Strayer EC, et al. Among authors: beaudoin jd. Nat Commun. 2024 Dec 30;15(1):10898. doi: 10.1038/s41467-024-55274-y. Nat Commun. 2024. PMID: 39738051 Free PMC article.

8

Exploring mRNA 3'-UTR G-quadruplexes: evidence of roles in both alternative polyadenylation and mRNA shortening.

Beaudoin JD, Perreault JP. Beaudoin JD, et al. Nucleic Acids Res. 2013 Jun;41(11):5898-911. doi: 10.1093/nar/gkt265. Epub 2013 Apr 22. Nucleic Acids Res. 2013. PMID: 23609544 Free PMC article.

9

Extreme conservation encodes the structural dynamics and function of 5' UTRs.

Gupta A, Beaudoin JD. Gupta A, et al. Among authors: beaudoin jd. Nat Genet. 2021 May;53(5):591-592. doi: 10.1038/s41588-021-00869-0. Nat Genet. 2021. PMID: 33888910 Free PMC article.

10

5'-UTR G-quadruplex structures acting as translational repressors.

Beaudoin JD, Perreault JP. Beaudoin JD, et al. Nucleic Acids Res. 2010 Nov;38(20):7022-36. doi: 10.1093/nar/gkq557. Epub 2010 Jun 22. Nucleic Acids Res. 2010. PMID: 20571090 Free PMC article.

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