Jernigan RL - Search Results

1

Combinatorial biosynthesis and the basis for substrate promiscuity in class I diterpene synthases.

Jia M, Mishra SK, Tufts S, Jernigan RL, Peters RJ. Jia M, et al. Among authors: jernigan rl. Metab Eng. 2019 Sep;55:44-58. doi: 10.1016/j.ymben.2019.06.008. Epub 2019 Jun 17. Metab Eng. 2019. PMID: 31220664 Free PMC article.

2

Altered dynamics upon oligomerization corresponds to key functional sites.

Mishra SK, Sankar K, Jernigan RL. Mishra SK, et al. Among authors: jernigan rl. Proteins. 2017 Aug;85(8):1422-1434. doi: 10.1002/prot.25302. Epub 2017 Apr 27. Proteins. 2017. PMID: 28383162 Free PMC article.

3

Comparisons of Protein Dynamics from Experimental Structure Ensembles, Molecular Dynamics Ensembles, and Coarse-Grained Elastic Network Models.

Sankar K, Mishra SK, Jernigan RL. Sankar K, et al. Among authors: jernigan rl. J Phys Chem B. 2018 May 31;122(21):5409-5417. doi: 10.1021/acs.jpcb.7b11668. Epub 2018 Feb 9. J Phys Chem B. 2018. PMID: 29376347

4

Protein dynamic communities from elastic network models align closely to the communities defined by molecular dynamics.

Mishra SK, Jernigan RL. Mishra SK, et al. Among authors: jernigan rl. PLoS One. 2018 Jun 20;13(6):e0199225. doi: 10.1371/journal.pone.0199225. eCollection 2018. PLoS One. 2018. PMID: 29924847 Free PMC article.

5

Coupling dynamics and evolutionary information with structure to identify protein regulatory and functional binding sites.

Mishra SK, Kandoi G, Jernigan RL. Mishra SK, et al. Among authors: jernigan rl. Proteins. 2019 Oct;87(10):850-868. doi: 10.1002/prot.25749. Epub 2019 Jun 22. Proteins. 2019. PMID: 31141211 Free PMC article.

6

Xyloglucan Xylosyltransferase 1 Displays Promiscuity Toward Donor Substrates During in Vitro Reactions.

Ehrlich JJ, Weerts RM, Shome S, Culbertson AT, Honzatko RB, Jernigan RL, Zabotina OA. Ehrlich JJ, et al. Among authors: jernigan rl. Plant Cell Physiol. 2021 Dec 27;62(12):1890-1901. doi: 10.1093/pcp/pcab114. Plant Cell Physiol. 2021. PMID: 34265062

7

Simulated Drug Efflux for the AbgT Family of Membrane Transporters.

Shome S, Sankar K, Jernigan RL. Shome S, et al. Among authors: jernigan rl. J Chem Inf Model. 2021 Nov 22;61(11):5673-5681. doi: 10.1021/acs.jcim.1c00516. Epub 2021 Oct 29. J Chem Inf Model. 2021. PMID: 34714659

8

Possible alternative and extension to the use of dynamics for structure matching: comment on "Comparing proteins by their internal dynamics: exploring structure-function relationships beyond static structural alignments" by C. Micheletti.

Jernigan RL. Jernigan RL. Phys Life Rev. 2013 Mar;10(1):37-8; discussion 39-40. doi: 10.1016/j.plrev.2013.01.013. Epub 2013 Feb 1. Phys Life Rev. 2013. PMID: 23394959 No abstract available.

9

Directional Force Originating from ATP Hydrolysis Drives the GroEL Conformational Change.

Liu J, Sankar K, Wang Y, Jia K, Jernigan RL. Liu J, et al. Among authors: jernigan rl. Biophys J. 2017 Apr 25;112(8):1561-1570. doi: 10.1016/j.bpj.2017.03.004. Biophys J. 2017. PMID: 28445748 Free PMC article.

10

Aldolases Utilize Different Oligomeric States To Preserve Their Functional Dynamics.

Katebi AR, Jernigan RL. Katebi AR, et al. Among authors: jernigan rl. Biochemistry. 2015 Jun 9;54(22):3543-54. doi: 10.1021/acs.biochem.5b00042. Epub 2015 May 27. Biochemistry. 2015. PMID: 25982518 Free PMC article.

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