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Challenges and recommendations to improve the installability and archival stability of omics computational tools.
Mangul S, Mosqueiro T, Abdill RJ, Duong D, Mitchell K, Sarwal V, Hill B, Brito J, Littman RJ, Statz B, Lam AK, Dayama G, Grieneisen L, Martin LS, Flint J, Eskin E, Blekhman R. Mangul S, et al. Among authors: flint j. PLoS Biol. 2019 Jun 20;17(6):e3000333. doi: 10.1371/journal.pbio.3000333. eCollection 2019 Jun. PLoS Biol. 2019. PMID: 31220077 Free PMC article.
Genome-wide association studies in mice.
Flint J, Eskin E. Flint J, et al. Nat Rev Genet. 2012 Nov;13(11):807-17. doi: 10.1038/nrg3335. Epub 2012 Oct 9. Nat Rev Genet. 2012. PMID: 23044826 Free PMC article. Review.
Systematic benchmarking of omics computational tools.
Mangul S, Martin LS, Hill BL, Lam AK, Distler MG, Zelikovsky A, Eskin E, Flint J. Mangul S, et al. Among authors: flint j. Nat Commun. 2019 Mar 27;10(1):1393. doi: 10.1038/s41467-019-09406-4. Nat Commun. 2019. PMID: 30918265 Free PMC article. Review.
A comprehensive benchmarking of WGS-based deletion structural variant callers.
Sarwal V, Niehus S, Ayyala R, Kim M, Sarkar A, Chang S, Lu A, Rajkumar N, Darfci-Maher N, Littman R, Chhugani K, Soylev A, Comarova Z, Wesel E, Castellanos J, Chikka R, Distler MG, Eskin E, Flint J, Mangul S. Sarwal V, et al. Among authors: flint j. Brief Bioinform. 2022 Jul 18;23(4):bbac221. doi: 10.1093/bib/bbac221. Brief Bioinform. 2022. PMID: 35753701 Free PMC article.
Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples.
Bloom JS, Sathe L, Munugala C, Jones EM, Gasperini M, Lubock NB, Yarza F, Thompson EM, Kovary KM, Park J, Marquette D, Kay S, Lucas M, Love T, Sina Booeshaghi A, Brandenberg OF, Guo L, Boocock J, Hochman M, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, Oland G, Choe BJ, Chandrasekaran S, Hilt EE, Butte MJ, Damoiseaux R, Kravit C, Cooper AR, Yin Y, Pachter L, Garner OB, Flint J, Eskin E, Luo C, Kosuri S, Kruglyak L, Arboleda VA. Bloom JS, et al. Among authors: flint j. Nat Biomed Eng. 2021 Jul;5(7):657-665. doi: 10.1038/s41551-021-00754-5. Epub 2021 Jul 1. Nat Biomed Eng. 2021. PMID: 34211145 Free PMC article.
Outside in.
Flint J. Flint J. PLoS Genet. 2019 Feb 28;15(2):e1008014. doi: 10.1371/journal.pgen.1008014. eCollection 2019 Feb. PLoS Genet. 2019. PMID: 30817793 Free PMC article. No abstract available.
652 results