Malfatti S - Search Results

1

multiPhATE: bioinformatics pipeline for functional annotation of phage isolates.

Ecale Zhou CL, Malfatti S, Kimbrel J, Philipson C, McNair K, Hamilton T, Edwards R, Souza B. Ecale Zhou CL, et al. Among authors: malfatti s. Bioinformatics. 2019 Nov 1;35(21):4402-4404. doi: 10.1093/bioinformatics/btz258. Bioinformatics. 2019. PMID: 31086982 Free PMC article.

2

MultiPhATE2: code for functional annotation and comparison of phage genomes.

Ecale Zhou CL, Kimbrel J, Edwards R, McNair K, Souza BA, Malfatti S. Ecale Zhou CL, et al. Among authors: malfatti s. G3 (Bethesda). 2021 May 7;11(5):jkab074. doi: 10.1093/g3journal/jkab074. G3 (Bethesda). 2021. PMID: 33734357 Free PMC article.

3

Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes.

McNair K, Ecale Zhou CL, Souza B, Malfatti S, Edwards RA. McNair K, et al. Among authors: malfatti s. Microorganisms. 2021 Jan 8;9(1):129. doi: 10.3390/microorganisms9010129. Microorganisms. 2021. PMID: 33429904 Free PMC article.

4

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149.

Tkavc R, Matrosova VY, Grichenko OE, Gostinčar C, Volpe RP, Klimenkova P, Gaidamakova EK, Zhou CE, Stewart BJ, Lyman MG, Malfatti SA, Rubinfeld B, Courtot M, Singh J, Dalgard CL, Hamilton T, Frey KG, Gunde-Cimerman N, Dugan L, Daly MJ. Tkavc R, et al. Among authors: malfatti sa. Front Microbiol. 2018 Jan 8;8:2528. doi: 10.3389/fmicb.2017.02528. eCollection 2017. Front Microbiol. 2018. PMID: 29375494 Free PMC article.

5

A comprehensive multi-omics approach uncovers adaptations for growth and survival of Pseudomonas aeruginosa on n-alkanes.

Grady SL, Malfatti SA, Gunasekera TS, Dalley BK, Lyman MG, Striebich RC, Mayhew MB, Zhou CL, Ruiz ON, Dugan LC. Grady SL, et al. Among authors: malfatti sa. BMC Genomics. 2017 Apr 28;18(1):334. doi: 10.1186/s12864-017-3708-4. BMC Genomics. 2017. PMID: 28454561 Free PMC article.

6

Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling.

Piao H, Lachman M, Malfatti S, Sczyrba A, Knierim B, Auer M, Tringe SG, Mackie RI, Yeoman CJ, Hess M. Piao H, et al. Among authors: malfatti s. Front Microbiol. 2014 Jul 22;5:307. doi: 10.3389/fmicb.2014.00307. eCollection 2014. Front Microbiol. 2014. PMID: 25101058 Free PMC article.

7

Microbial iron cycling in acidic geothermal springs of yellowstone national park: integrating molecular surveys, geochemical processes, and isolation of novel fe-active microorganisms.

Kozubal MA, Macur RE, Jay ZJ, Beam JP, Malfatti SA, Tringe SG, Kocar BD, Borch T, Inskeep WP. Kozubal MA, et al. Front Microbiol. 2012 Mar 26;3:109. doi: 10.3389/fmicb.2012.00109. eCollection 2012. Front Microbiol. 2012. PMID: 22470372 Free PMC article.

8

The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling.

Lindemann SR, Moran JJ, Stegen JC, Renslow RS, Hutchison JR, Cole JK, Dohnalkova AC, Tremblay J, Singh K, Malfatti SA, Chen F, Tringe SG, Beyenal H, Fredrickson JK. Lindemann SR, et al. Among authors: malfatti sa. Front Microbiol. 2013 Nov 13;4:323. doi: 10.3389/fmicb.2013.00323. eCollection 2013. Front Microbiol. 2013. PMID: 24312082 Free PMC article.

9

Transcriptomic analysis of the highly efficient oil-degrading bacterium Acinetobacter venetianus RAG-1 reveals genes important in dodecane uptake and utilization.

Kothari A, Charrier M, Wu YW, Malfatti S, Zhou CE, Singer SW, Dugan L, Mukhopadhyay A. Kothari A, et al. Among authors: malfatti s. FEMS Microbiol Lett. 2016 Oct;363(20):fnw224. doi: 10.1093/femsle/fnw224. Epub 2016 Sep 22. FEMS Microbiol Lett. 2016. PMID: 27664055 Free PMC article.

10

Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen.

Chain PS, Hu P, Malfatti SA, Radnedge L, Larimer F, Vergez LM, Worsham P, Chu MC, Andersen GL. Chain PS, et al. Among authors: malfatti sa. J Bacteriol. 2006 Jun;188(12):4453-63. doi: 10.1128/JB.00124-06. J Bacteriol. 2006. PMID: 16740952 Free PMC article.

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