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Page 1
Genomic and Epidemiological Evidence of a Dominant Panton-Valentine Leucocidin-Positive Methicillin Resistant Staphylococcus aureus Lineage in Sri Lanka and Presence Among Isolates From the United Kingdom and Australia.
McTavish SM, Snow SJ, Cook EC, Pichon B, Coleman S, Coombs GW, Pang S, Arias CA, Díaz L, Boldock E, Davies S, Udukala M, Kearns AM, Siribaddana S, de Silva TI. McTavish SM, et al. Among authors: de silva ti. Front Cell Infect Microbiol. 2019 Apr 26;9:123. doi: 10.3389/fcimb.2019.00123. eCollection 2019. Front Cell Infect Microbiol. 2019. PMID: 31080781 Free PMC article.
Genomic and Epidemiological Analysis of SARS-CoV-2 Viruses in Sri Lanka.
Jeewandara C, Jayathilaka D, Ranasinghe D, Hsu NS, Ariyaratne D, Jayadas TT, Panambara Arachchige DM, Lindsey BB, Gomes L, Parker MD, Wijewickrama A, Karunaratne M, Ogg GS, de Silva TI, Malavige GN. Jeewandara C, et al. Among authors: de silva ti. Front Microbiol. 2021 Sep 16;12:722838. doi: 10.3389/fmicb.2021.722838. eCollection 2021. Front Microbiol. 2021. PMID: 34603246 Free PMC article.
The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study.
Boshier FAT, Venturini C, Stirrup O, Guerra-Assunção JA, Alcolea-Medina A, Becket AH, Byott M, Charalampous T, Filipe ADS, Frampton D, Glaysher S, Khan T, Kulasegara-Shylini R, Kele B, Monahan IM, Mollett G, Parker M, Pelosi E, Randell P, Roy S, Taylor JF, Weller SJ, Wilson-Davies E, Wade P, Williams R, Copas AJ, Cutino-Moguel T, Freemantle N, Hayward AC, Holmes A, Hughes J, Mahungu TW, Nebbia G, Nastouli E, Partridge DG, Pope CF, Price JR, Robson SC, Saeed K, Shin GY, de Silva TI, Snell LB, Thomson EC, Witney AA, Breuer J; COG-UK HOCI Variant Substudy consortium*, The COVID-19 Genomics UK (COG-UK) consortium. Boshier FAT, et al. Among authors: de silva ti. J Infect. 2021 Dec;83(6):693-700. doi: 10.1016/j.jinf.2021.09.022. Epub 2021 Oct 2. J Infect. 2021. PMID: 34610391 Free PMC article.
Improved sensitivity using a dual target, E and RdRp assay for the diagnosis of SARS-CoV-2 infection: Experience at a large NHS Foundation Trust in the UK.
Colton H, Ankcorn M, Yavuz M, Tovey L, Cope A, Raza M, Keeley AJ, State A, Poller B, Parker M, de Silva TI, Evans C. Colton H, et al. Among authors: de silva ti. J Infect. 2021 Jan;82(1):159-198. doi: 10.1016/j.jinf.2020.05.061. Epub 2020 May 28. J Infect. 2021. PMID: 32474037 Free PMC article. No abstract available.
Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data.
Stirrup O, Hughes J, Parker M, Partridge DG, Shepherd JG, Blackstone J, Coll F, Keeley A, Lindsey BB, Marek A, Peters C, Singer JB; COVID-19 Genomics UK (COG-UK) consortium; Tamuri A, de Silva TI, Thomson EC, Breuer J. Stirrup O, et al. Among authors: de silva ti. Elife. 2021 Jun 29;10:e65828. doi: 10.7554/eLife.65828. Elife. 2021. PMID: 34184637 Free PMC article.
Genomic Characterization of Skin and Soft Tissue Streptococcus pyogenes Isolates from a Low-Income and a High-Income Setting.
Bah SY, Keeley AJ, Armitage EP, Khalid H, Chaudhuri RR, Senghore E, Manneh J, Tilley L, Marks M, Darboe S, Sesay AK, de Silva TI, Turner CE; MRCG Strep A Study Group. Bah SY, et al. Among authors: de silva ti. mSphere. 2023 Feb 21;8(1):e0046922. doi: 10.1128/msphere.00469-22. Epub 2022 Dec 12. mSphere. 2023. PMID: 36507654 Free PMC article.
Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves.
Lindsey BB, Villabona-Arenas CJ, Campbell F, Keeley AJ, Parker MD, Shah DR, Parsons H, Zhang P, Kakkar N, Gallis M, Foulkes BH, Wolverson P, Louka SF, Christou S, State A, Johnson K, Raza M, Hsu S, Jombart T, Cori A; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans CM, Partridge DG, Atkins KE, Hué S, de Silva TI. Lindsey BB, et al. Among authors: de silva ti. Nat Commun. 2022 Feb 3;13(1):671. doi: 10.1038/s41467-022-28291-y. Nat Commun. 2022. PMID: 35115517 Free PMC article.
Factors affecting turnaround time of SARS-CoV-2 sequencing for inpatient infection prevention and control decision making: analysis of data from the COG-UK HOCI study.
Colton H, Parker MD, Stirrup O, Blackstone J, Loose M, McClure CP, Roy S, Williams C, McLeod J, Smith D, Taha Y, Zhang P, Hsu SN, Kele B, Harris K, Mapp F, Williams R; COG-UK HOCI Investigators, COVID-19 Genomics UK (COG-UK) Consortium; Flowers P, Breuer J, Partridge DG, de Silva TI. Colton H, et al. Among authors: de silva ti. J Hosp Infect. 2023 Jan;131:34-42. doi: 10.1016/j.jhin.2022.09.022. Epub 2022 Oct 10. J Hosp Infect. 2023. PMID: 36228768 Free PMC article.
154 results