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Page 1
The genome sequence of segmental allotetraploid peanut Arachis hypogaea.
Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J. Bertioli DJ, et al. Among authors: el baidouri m, aiden el. Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1. Nat Genet. 2019. PMID: 31043755 Free article.
Depletion of lamins B1 and B2 alters chromatin mobility and induces differential gene expression by a mesoscale-motion dependent mechanism.
Pujadas EM, Wei X, Acosta N, Carter L, Yang J, Almassalha L, Daneshkhah A, Rao SSP, Agrawal V, Seker-Polat F, Aiden EL, Kanemaki MT, Backman V, Adli M. Pujadas EM, et al. Among authors: aiden el. bioRxiv [Preprint]. 2023 Jun 26:2023.06.26.546573. doi: 10.1101/2023.06.26.546573. bioRxiv. 2023. Update in: Genome Biol. 2024 Mar 22;25(1):77. doi: 10.1186/s13059-024-03212-y PMID: 37425796 Free PMC article. Updated. Preprint.
Predicting A/B compartments from histone modifications using deep learning.
Zheng S, Thakkar N, Harris HL, Liu S, Zhang M, Gerstein M, Aiden EL, Rowley MJ, Noble WS, Gürsoy G, Singh R. Zheng S, et al. Among authors: aiden el. iScience. 2024 Mar 27;27(5):109570. doi: 10.1016/j.isci.2024.109570. eCollection 2024 May 17. iScience. 2024. PMID: 38646172 Free PMC article.
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.
Field MA, Rosen BD, Dudchenko O, Chan EKF, Minoche AE, Edwards RJ, Barton K, Lyons RJ, Tuipulotu DE, Hayes VM, D Omer A, Colaric Z, Keilwagen J, Skvortsova K, Bogdanovic O, Smith MA, Aiden EL, Smith TPL, Zammit RA, Ballard JWO. Field MA, et al. Among authors: aiden el. Gigascience. 2020 Apr 1;9(4):giaa027. doi: 10.1093/gigascience/giaa027. Gigascience. 2020. PMID: 32236524 Free PMC article.
A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits.
Garg G, Kamphuis LG, Bayer PE, Kaur P, Dudchenko O, Taylor CM, Frick KM, Foley RC, Gao LL, Aiden EL, Edwards D, Singh KB. Garg G, et al. Among authors: aiden el. Plant J. 2022 Sep;111(5):1252-1266. doi: 10.1111/tpj.15885. Epub 2022 Aug 11. Plant J. 2022. PMID: 35779281 Free PMC article.
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