McDermaid A - Search Results

1

Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity.

Xia Y, DeBolt S, Ma Q, McDermaid A, Wang C, Shapiro N, Woyke T, Kyrpides NC. Xia Y, et al. Among authors: mcdermaid a. Microbiol Resour Announc. 2019 Apr 11;8(15):e00275-19. doi: 10.1128/MRA.00275-19. Microbiol Resour Announc. 2019. PMID: 30975811 Free PMC article.

2

Improved Draft Genome Sequence of Bacillus sp. Strain YF23, Which Has Plant Growth-Promoting Activity.

Xia Y, DeBolt S, Ma Q, McDermaid A, Wang C, Shapiro N, Woyke T, Kyrpides NC. Xia Y, et al. Among authors: mcdermaid a. Microbiol Resour Announc. 2019 Apr 11;8(15):e00099-19. doi: 10.1128/MRA.00099-19. Microbiol Resour Announc. 2019. PMID: 30975803 Free PMC article.

3

An algorithmic perspective of de novo cis-regulatory motif finding based on ChIP-seq data.

Liu B, Yang J, Li Y, McDermaid A, Ma Q. Liu B, et al. Among authors: mcdermaid a. Brief Bioinform. 2018 Sep 28;19(5):1069-1081. doi: 10.1093/bib/bbx026. Brief Bioinform. 2018. PMID: 28334268 Review.

4

DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses.

Yang J, Chen X, McDermaid A, Ma Q. Yang J, et al. Among authors: mcdermaid a. Bioinformatics. 2017 Aug 15;33(16):2586-2588. doi: 10.1093/bioinformatics/btx223. Bioinformatics. 2017. PMID: 28419194

5

A New Machine Learning-Based Framework for Mapping Uncertainty Analysis in RNA-Seq Read Alignment and Gene Expression Estimation.

McDermaid A, Chen X, Zhang Y, Wang C, Gu S, Xie J, Ma Q. McDermaid A, et al. Front Genet. 2018 Aug 14;9:313. doi: 10.3389/fgene.2018.00313. eCollection 2018. Front Genet. 2018. PMID: 30154828 Free PMC article.

6

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis.

Monier B, McDermaid A, Wang C, Zhao J, Miller A, Fennell A, Ma Q. Monier B, et al. Among authors: mcdermaid a. PLoS Comput Biol. 2019 Feb 14;15(2):e1006792. doi: 10.1371/journal.pcbi.1006792. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30763315 Free PMC article.

7

Differential gene expression in non-transgenic and transgenic "M.26" apple overexpressing a peach CBF gene during the transition from eco-dormancy to bud break.

Artlip T, McDermaid A, Ma Q, Wisniewski M. Artlip T, et al. Among authors: mcdermaid a. Hortic Res. 2019 Jul 11;6:86. doi: 10.1038/s41438-019-0168-9. eCollection 2019. Hortic Res. 2019. PMID: 31666956 Free PMC article.

8

MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.

Ma A, Sun M, McDermaid A, Liu B, Ma Q. Ma A, et al. Among authors: mcdermaid a. Bioinformatics. 2019 Nov 1;35(21):4474-4477. doi: 10.1093/bioinformatics/btz414. Bioinformatics. 2019. PMID: 31116375 Free PMC article.

9

Interpretation of differential gene expression results of RNA-seq data: review and integration.

McDermaid A, Monier B, Zhao J, Liu B, Ma Q. McDermaid A, et al. Brief Bioinform. 2019 Nov 27;20(6):2044-2054. doi: 10.1093/bib/bby067. Brief Bioinform. 2019. PMID: 30099484 Free PMC article. Review.

10

IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq.

Ma A, Wang C, Chang Y, Brennan FH, McDermaid A, Liu B, Zhang C, Popovich PG, Ma Q. Ma A, et al. Among authors: mcdermaid a. Nucleic Acids Res. 2020 Jul 2;48(W1):W275-W286. doi: 10.1093/nar/gkaa394. Nucleic Acids Res. 2020. PMID: 32421805 Free PMC article.

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