Foster I - Search Results

1

Reproducible big data science: A case study in continuous FAIRness.

Madduri R, Chard K, D'Arcy M, Jung SC, Rodriguez A, Sulakhe D, Deutsch E, Funk C, Heavner B, Richards M, Shannon P, Glusman G, Price N, Kesselman C, Foster I. Madduri R, et al. Among authors: foster i. PLoS One. 2019 Apr 11;14(4):e0213013. doi: 10.1371/journal.pone.0213013. eCollection 2019. PLoS One. 2019. PMID: 30973881 Free PMC article.

2

Climate impacts on global agriculture emerge earlier in new generation of climate and crop models.

Jägermeyr J, Müller C, Ruane AC, Elliott J, Balkovic J, Castillo O, Faye B, Foster I, Folberth C, Franke JA, Fuchs K, Guarin JR, Heinke J, Hoogenboom G, Iizumi T, Jain AK, Kelly D, Khabarov N, Lange S, Lin TS, Liu W, Mialyk O, Minoli S, Moyer EJ, Okada M, Phillips M, Porter C, Rabin SS, Scheer C, Schneider JM, Schyns JF, Skalsky R, Smerald A, Stella T, Stephens H, Webber H, Zabel F, Rosenzweig C. Jägermeyr J, et al. Among authors: foster i. Nat Food. 2021 Nov;2(11):873-885. doi: 10.1038/s43016-021-00400-y. Epub 2021 Nov 1. Nat Food. 2021. PMID: 37117503

3

GNARE: automated system for high-throughput genome analysis with grid computational backend.

Sulakhe D, Rodriguez A, D'Souza M, Wilde M, Nefedova V, Foster I, Maltsev N. Sulakhe D, et al. Among authors: foster i. J Clin Monit Comput. 2005 Oct;19(4-5):361-9. doi: 10.1007/s10877-005-3463-y. J Clin Monit Comput. 2005. PMID: 16328950

4

Interoperability of GADU in using heterogeneous grid resources for bioinformatics applications.

Sulakhe D, Rodriguez A, Wilde M, Foster I, Maltsev N. Sulakhe D, et al. Among authors: foster i. IEEE Trans Inf Technol Biomed. 2008 Mar;12(2):241-6. doi: 10.1109/TITB.2007.897783. IEEE Trans Inf Technol Biomed. 2008. PMID: 18348953

5

A Comparison of Using Taverna and BPEL in Building Scientific Workflows: the case of caGrid.

Tan W, Missier P, Foster I, Madduri R, Goble C. Tan W, et al. Among authors: foster i. Concurr Comput. 2010 Jun 25;22(9):1098-1117. doi: 10.1002/cpe.1547. Concurr Comput. 2010. PMID: 20625534 Free PMC article.

6

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA. Tan W, et al. Among authors: foster i. BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542. BMC Bioinformatics. 2010. PMID: 21044328 Free PMC article.

7

Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses.

Liu B, Madduri RK, Sotomayor B, Chard K, Lacinski L, Dave UJ, Li J, Liu C, Foster IT. Liu B, et al. J Biomed Inform. 2014 Jun;49:119-33. doi: 10.1016/j.jbi.2014.01.005. Epub 2014 Jan 22. J Biomed Inform. 2014. PMID: 24462600 Free PMC article.

8

Lynx web services for annotations and systems analysis of multi-gene disorders.

Sulakhe D, Taylor A, Balasubramanian S, Feng B, Xie B, Börnigen D, Dave UJ, Foster IT, Gilliam TC, Maltsev N. Sulakhe D, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W473-7. doi: 10.1093/nar/gku517. Epub 2014 Jun 19. Nucleic Acids Res. 2014. PMID: 24948611 Free PMC article.

9

Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.

Trubetskoy V, Rodriguez A, Dave U, Campbell N, Crawford EL, Cook EH, Sutcliffe JS, Foster I, Madduri R, Cox NJ, Davis LK. Trubetskoy V, et al. Among authors: foster i. Bioinformatics. 2015 Jan 15;31(2):187-93. doi: 10.1093/bioinformatics/btu591. Epub 2014 Sep 29. Bioinformatics. 2015. PMID: 25270638 Free PMC article.

10

Experiences Building Globus Genomics: A Next-Generation Sequencing Analysis Service using Galaxy, Globus, and Amazon Web Services.

Madduri RK, Sulakhe D, Lacinski L, Liu B, Rodriguez A, Chard K, Dave UJ, Foster IT. Madduri RK, et al. Concurr Comput. 2014 Sep 10;26(13):2266-2279. doi: 10.1002/cpe.3274. Concurr Comput. 2014. PMID: 25342933 Free PMC article.

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