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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. Bouckaert R, et al. Among authors: mendes fk. PLoS Comput Biol. 2019 Apr 8;15(4):e1006650. doi: 10.1371/journal.pcbi.1006650. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30958812 Free PMC article.
Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand.
Geoghegan JL, Ren X, Storey M, Hadfield J, Jelley L, Jefferies S, Sherwood J, Paine S, Huang S, Douglas J, Mendes FK, Sporle A, Baker MG, Murdoch DR, French N, Simpson CR, Welch D, Drummond AJ, Holmes EC, Duchêne S, de Ligt J. Geoghegan JL, et al. Among authors: mendes fk. Nat Commun. 2020 Dec 11;11(1):6351. doi: 10.1038/s41467-020-20235-8. Nat Commun. 2020. PMID: 33311501 Free PMC article.
Phylodynamics reveals the role of human travel and contact tracing in controlling the first wave of COVID-19 in four island nations.
Douglas J, Mendes FK, Bouckaert R, Xie D, Jiménez-Silva CL, Swanepoel C, de Ligt J, Ren X, Storey M, Hadfield J, Simpson CR, Geoghegan JL, Drummond AJ, Welch D. Douglas J, et al. Among authors: mendes fk. Virus Evol. 2021 Jun 8;7(2):veab052. doi: 10.1093/ve/veab052. eCollection 2021. Virus Evol. 2021. PMID: 34527282 Free PMC article.
How to validate a Bayesian evolutionary model.
Mendes FK, Bouckaert R, Carvalho LM, Drummond AJ. Mendes FK, et al. Syst Biol. 2024 Nov 7:syae064. doi: 10.1093/sysbio/syae064. Online ahead of print. Syst Biol. 2024. PMID: 39506375
17 results