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Assessing the accuracy of contact predictions in CASP13.
Shrestha R, Fajardo E, Gil N, Fidelis K, Kryshtafovych A, Monastyrskyy B, Fiser A. Shrestha R, et al. Proteins. 2019 Dec;87(12):1058-1068. doi: 10.1002/prot.25819. Epub 2019 Oct 24. Proteins. 2019. PMID: 31587357 Free PMC article.
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A. Fajardo JE, et al. Among authors: shrestha r. Proteins. 2019 Dec;87(12):1283-1297. doi: 10.1002/prot.25816. Epub 2019 Oct 7. Proteins. 2019. PMID: 31569265 Free PMC article.
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A. Fajardo JE, et al. Among authors: shrestha r. Proteins. 2020 Mar;88(3):540. doi: 10.1002/prot.25867. Epub 2020 Jan 3. Proteins. 2020. PMID: 31977133 No abstract available.
Multiscale footprints reveal the organization of cis-regulatory elements.
Hu Y, Horlbeck MA, Zhang R, Ma S, Shrestha R, Kartha VK, Duarte FM, Hock C, Savage RE, Labade A, Kletzien H, Meliki A, Castillo A, Durand NC, Mattei E, Anderson LJ, Tay T, Earl AS, Shoresh N, Epstein CB, Wagers AJ, Buenrostro JD. Hu Y, et al. Among authors: shrestha r. Nature. 2025 Jan 22. doi: 10.1038/s41586-024-08443-4. Online ahead of print. Nature. 2025. PMID: 39843737
1,911 results