Vingron M - Search Results

1

Predicting enhancers in mammalian genomes using supervised hidden Markov models.

Zehnder T, Benner P, Vingron M. Zehnder T, et al. Among authors: vingron m. BMC Bioinformatics. 2019 Mar 27;20(1):157. doi: 10.1186/s12859-019-2708-6. BMC Bioinformatics. 2019. PMID: 30917778 Free PMC article.

2

Large scale hierarchical clustering of protein sequences.

Krause A, Stoye J, Vingron M. Krause A, et al. Among authors: vingron m. BMC Bioinformatics. 2005 Jan 22;6:15. doi: 10.1186/1471-2105-6-15. BMC Bioinformatics. 2005. PMID: 15663796 Free PMC article.

3

Prioritization of gene regulatory interactions from large-scale modules in yeast.

Lee HJ, Manke T, Bringas R, Vingron M. Lee HJ, et al. Among authors: vingron m. BMC Bioinformatics. 2008 Jan 22;9:32. doi: 10.1186/1471-2105-9-32. BMC Bioinformatics. 2008. PMID: 18211684 Free PMC article.

4

Comparison of sequence-dependent tiling array normalization approaches.

Chung HR, Vingron M. Chung HR, et al. Among authors: vingron m. BMC Bioinformatics. 2009 Jun 30;10:204. doi: 10.1186/1471-2105-10-204. BMC Bioinformatics. 2009. PMID: 19566918 Free PMC article.

5

In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach.

Chavez L, Bais AS, Vingron M, Lehrach H, Adjaye J, Herwig R. Chavez L, et al. Among authors: vingron m. BMC Genomics. 2009 Jul 15;10:314. doi: 10.1186/1471-2164-10-314. BMC Genomics. 2009. PMID: 19604364 Free PMC article.

6

Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.

Szczurek E, Markowetz F, Gat-Viks I, Biecek P, Tiuryn J, Vingron M. Szczurek E, et al. Among authors: vingron m. BMC Bioinformatics. 2011 Jun 21;12:249. doi: 10.1186/1471-2105-12-249. BMC Bioinformatics. 2011. PMID: 21693013 Free PMC article.

7

A tandem sequence motif acts as a distance-dependent enhancer in a set of genes involved in translation by binding the proteins NonO and SFPQ.

Roepcke S, Stahlberg S, Klein H, Schulz MH, Theobald L, Gohlke S, Vingron M, Walther DJ. Roepcke S, et al. Among authors: vingron m. BMC Genomics. 2011 Dec 20;12:624. doi: 10.1186/1471-2164-12-624. BMC Genomics. 2011. PMID: 22185324 Free PMC article.

8

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.

Göke J, Schulz MH, Lasserre J, Vingron M. Göke J, et al. Among authors: vingron m. Bioinformatics. 2012 Mar 1;28(5):656-63. doi: 10.1093/bioinformatics/bts028. Epub 2012 Jan 12. Bioinformatics. 2012. PMID: 22247280 Free PMC article.

9

Inferring nucleosome positions with their histone mark annotation from ChIP data.

Mammana A, Vingron M, Chung HR. Mammana A, et al. Among authors: vingron m. Bioinformatics. 2013 Oct 15;29(20):2547-54. doi: 10.1093/bioinformatics/btt449. Epub 2013 Aug 26. Bioinformatics. 2013. PMID: 23981350 Free PMC article.

10

Condition-specific target prediction from motifs and expression.

Meng G, Vingron M. Meng G, et al. Among authors: vingron m. Bioinformatics. 2014 Jun 15;30(12):1643-50. doi: 10.1093/bioinformatics/btu066. Epub 2014 Feb 14. Bioinformatics. 2014. PMID: 24532727

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