Kaas RS - Search Results

1

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.

Hendriksen RS, Munk P, Njage P, van Bunnik B, McNally L, Lukjancenko O, Röder T, Nieuwenhuijse D, Pedersen SK, Kjeldgaard J, Kaas RS, Clausen PTLC, Vogt JK, Leekitcharoenphon P, van de Schans MGM, Zuidema T, de Roda Husman AM, Rasmussen S, Petersen B; Global Sewage Surveillance project consortium; Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane A, Pamp SJ, Lund O, Hald T, Woolhouse M, Koopmans MP, Vigre H, Petersen TN, Aarestrup FM. Hendriksen RS, et al. Among authors: kaas rs. Nat Commun. 2019 Mar 8;10(1):1124. doi: 10.1038/s41467-019-08853-3. Nat Commun. 2019. PMID: 30850636 Free PMC article.

2

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak.

Hendriksen RS, Price LB, Schupp JM, Gillece JD, Kaas RS, Engelthaler DM, Bortolaia V, Pearson T, Waters AE, Upadhyay BP, Shrestha SD, Adhikari S, Shakya G, Keim PS, Aarestrup FM. Hendriksen RS, et al. Among authors: kaas rs. mBio. 2011 Sep 1;2(4):e00157-11. doi: 10.1128/mBio.00157-11. Print 2011. mBio. 2011. PMID: 21862630 Free PMC article.

3

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes.

Kaas RS, Friis C, Ussery DW, Aarestrup FM. Kaas RS, et al. BMC Genomics. 2012 Oct 31;13:577. doi: 10.1186/1471-2164-13-577. BMC Genomics. 2012. PMID: 23114024 Free PMC article.

4

Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.

Zankari E, Hasman H, Kaas RS, Seyfarth AM, Agersø Y, Lund O, Larsen MV, Aarestrup FM. Zankari E, et al. Among authors: kaas rs. J Antimicrob Chemother. 2013 Apr;68(4):771-7. doi: 10.1093/jac/dks496. Epub 2012 Dec 11. J Antimicrob Chemother. 2013. PMID: 23233485

5

snpTree--a web-server to identify and construct SNP trees from whole genome sequence data.

Leekitcharoenphon P, Kaas RS, Thomsen MC, Friis C, Rasmussen S, Aarestrup FM. Leekitcharoenphon P, et al. Among authors: kaas rs. BMC Genomics. 2012;13 Suppl 7(Suppl 7):S6. doi: 10.1186/1471-2164-13-S7-S6. Epub 2012 Dec 13. BMC Genomics. 2012. PMID: 23281601 Free PMC article.

6

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM. Leekitcharoenphon P, et al. Among authors: kaas rs. PLoS One. 2014 Feb 4;9(2):e87991. doi: 10.1371/journal.pone.0087991. eCollection 2014. PLoS One. 2014. PMID: 24505344 Free PMC article.

7

Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival.

Christiansen MT, Kaas RS, Chaudhuri RR, Holmes MA, Hasman H, Aarestrup FM. Christiansen MT, et al. Among authors: kaas rs. PLoS One. 2014 Feb 12;9(2):e89018. doi: 10.1371/journal.pone.0089018. eCollection 2014. PLoS One. 2014. PMID: 24563689 Free PMC article.

8

Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli.

Joensen KG, Scheutz F, Lund O, Hasman H, Kaas RS, Nielsen EM, Aarestrup FM. Joensen KG, et al. Among authors: kaas rs. J Clin Microbiol. 2014 May;52(5):1501-10. doi: 10.1128/JCM.03617-13. Epub 2014 Feb 26. J Clin Microbiol. 2014. PMID: 24574290 Free PMC article.

9

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.

Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium; Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD; MetaHIT Consortium. Nielsen HB, et al. Among authors: kaas rs. Nat Biotechnol. 2014 Aug;32(8):822-8. doi: 10.1038/nbt.2939. Epub 2014 Jul 6. Nat Biotechnol. 2014. PMID: 24997787

10

Solving the problem of comparing whole bacterial genomes across different sequencing platforms.

Kaas RS, Leekitcharoenphon P, Aarestrup FM, Lund O. Kaas RS, et al. PLoS One. 2014 Aug 11;9(8):e104984. doi: 10.1371/journal.pone.0104984. eCollection 2014. PLoS One. 2014. PMID: 25110940 Free PMC article.

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