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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0.
Heirendt L, Arreckx S, Pfau T, Mendoza SN, Richelle A, Heinken A, Haraldsdóttir HS, Wachowiak J, Keating SM, Vlasov V, Magnusdóttir S, Ng CY, Preciat G, Žagare A, Chan SHJ, Aurich MK, Clancy CM, Modamio J, Sauls JT, Noronha A, Bordbar A, Cousins B, El Assal DC, Valcarcel LV, Apaolaza I, Ghaderi S, Ahookhosh M, Ben Guebila M, Kostromins A, Sompairac N, Le HM, Ma D, Sun Y, Wang L, Yurkovich JT, Oliveira MAP, Vuong PT, El Assal LP, Kuperstein I, Zinovyev A, Hinton HS, Bryant WA, Aragón Artacho FJ, Planes FJ, Stalidzans E, Maass A, Vempala S, Hucka M, Saunders MA, Maranas CD, Lewis NE, Sauter T, Palsson BØ, Thiele I, Fleming RMT. Heirendt L, et al. Among authors: yurkovich jt. Nat Protoc. 2019 Mar;14(3):639-702. doi: 10.1038/s41596-018-0098-2. Nat Protoc. 2019. PMID: 30787451 Free PMC article.
Is the kinetome conserved?
Palsson BO, Yurkovich JT. Palsson BO, et al. Among authors: yurkovich jt. Mol Syst Biol. 2022 Feb;18(2):e10782. doi: 10.15252/msb.202110782. Mol Syst Biol. 2022. PMID: 35188334 Free PMC article.
The quantitative metabolome is shaped by abiotic constraints.
Akbari A, Yurkovich JT, Zielinski DC, Palsson BO. Akbari A, et al. Among authors: yurkovich jt. Nat Commun. 2021 May 26;12(1):3178. doi: 10.1038/s41467-021-23214-9. Nat Commun. 2021. PMID: 34039963 Free PMC article.
48 results