Baker R - Search Results

1

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.

Olm MR, West PT, Brooks B, Firek BA, Baker R, Morowitz MJ, Banfield JF. Olm MR, et al. Among authors: baker r. Microbiome. 2019 Feb 15;7(1):26. doi: 10.1186/s40168-019-0638-1. Microbiome. 2019. PMID: 30770768 Free PMC article.

2

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria.

Olm MR, Bhattacharya N, Crits-Christoph A, Firek BA, Baker R, Song YS, Morowitz MJ, Banfield JF. Olm MR, et al. Among authors: baker r. Sci Adv. 2019 Dec 11;5(12):eaax5727. doi: 10.1126/sciadv.aax5727. eCollection 2019 Dec. Sci Adv. 2019. PMID: 31844663 Free PMC article.

3

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut.

Sher Y, Olm MR, Raveh-Sadka T, Brown CT, Sher R, Firek B, Baker R, Morowitz MJ, Banfield JF. Sher Y, et al. Among authors: baker r. PLoS One. 2020 Mar 4;15(3):e0229537. doi: 10.1371/journal.pone.0229537. eCollection 2020. PLoS One. 2020. PMID: 32130257 Free PMC article.

4

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics.

West PT, Peters SL, Olm MR, Yu FB, Gause H, Lou YC, Firek BA, Baker R, Johnson AD, Morowitz MJ, Hettich RL, Banfield JF. West PT, et al. Among authors: baker r. Microbiome. 2021 Jun 21;9(1):142. doi: 10.1186/s40168-021-01085-y. Microbiome. 2021. PMID: 34154658 Free PMC article.

5

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition.

Lou YC, Olm MR, Diamond S, Crits-Christoph A, Firek BA, Baker R, Morowitz MJ, Banfield JF. Lou YC, et al. Among authors: baker r. Cell Rep Med. 2021 Sep 7;2(9):100393. doi: 10.1016/j.xcrm.2021.100393. eCollection 2021 Sep 21. Cell Rep Med. 2021. PMID: 34622230 Free PMC article.

6

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants.

Brooks B, Firek BA, Miller CS, Sharon I, Thomas BC, Baker R, Morowitz MJ, Banfield JF. Brooks B, et al. Among authors: baker r. Microbiome. 2014 Jan 28;2(1):1. doi: 10.1186/2049-2618-2-1. Microbiome. 2014. PMID: 24468033 Free PMC article.

7

Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.

Raveh-Sadka T, Thomas BC, Singh A, Firek B, Brooks B, Castelle CJ, Sharon I, Baker R, Good M, Morowitz MJ, Banfield JF. Raveh-Sadka T, et al. Among authors: baker r. Elife. 2015 Mar 3;4:e05477. doi: 10.7554/eLife.05477. Elife. 2015. PMID: 25735037 Free PMC article.

8

Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants.

Raveh-Sadka T, Firek B, Sharon I, Baker R, Brown CT, Thomas BC, Morowitz MJ, Banfield JF. Raveh-Sadka T, et al. Among authors: baker r. ISME J. 2016 Dec;10(12):2817-2830. doi: 10.1038/ismej.2016.83. Epub 2016 Jun 3. ISME J. 2016. PMID: 27258951 Free PMC article.

9

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

Olm MR, Brown CT, Brooks B, Firek B, Baker R, Burstein D, Soenjoyo K, Thomas BC, Morowitz M, Banfield JF. Olm MR, et al. Among authors: baker r. Genome Res. 2017 Apr;27(4):601-612. doi: 10.1101/gr.213256.116. Epub 2017 Jan 10. Genome Res. 2017. PMID: 28073918 Free PMC article.

10

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.

Brooks B, Olm MR, Firek BA, Baker R, Thomas BC, Morowitz MJ, Banfield JF. Brooks B, et al. Among authors: baker r. Nat Commun. 2017 Nov 27;8(1):1814. doi: 10.1038/s41467-017-02018-w. Nat Commun. 2017. PMID: 29180750 Free PMC article.

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