Fennell A - Search Results

1

IRIS-EDA: An integrated RNA-Seq interpretation system for gene expression data analysis.

Monier B, McDermaid A, Wang C, Zhao J, Miller A, Fennell A, Ma Q. Monier B, et al. Among authors: fennell a. PLoS Comput Biol. 2019 Feb 14;15(2):e1006792. doi: 10.1371/journal.pcbi.1006792. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30763315 Free PMC article.

2

An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.

Liu B, Zhang H, Zhou C, Li G, Fennell A, Wang G, Kang Y, Liu Q, Ma Q. Liu B, et al. Among authors: fennell a. BMC Genomics. 2016 Aug 9;17:578. doi: 10.1186/s12864-016-2982-x. BMC Genomics. 2016. PMID: 27507169 Free PMC article.

3

QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.

Zhang Y, Xie J, Yang J, Fennell A, Zhang C, Ma Q. Zhang Y, et al. Among authors: fennell a. Bioinformatics. 2017 Feb 1;33(3):450-452. doi: 10.1093/bioinformatics/btw635. Bioinformatics. 2017. PMID: 28172469

4

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data.

Xie J, Ma A, Fennell A, Ma Q, Zhao J. Xie J, et al. Among authors: fennell a. Brief Bioinform. 2019 Jul 19;20(4):1449-1464. doi: 10.1093/bib/bby014. Brief Bioinform. 2019. PMID: 29490019 Free PMC article. Review.

5

Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.).

Khadka VS, Vaughn K, Xie J, Swaminathan P, Ma Q, Cramer GR, Fennell AY. Khadka VS, et al. BMC Plant Biol. 2019 Feb 13;19(1):72. doi: 10.1186/s12870-019-1664-7. BMC Plant Biol. 2019. PMID: 30760212 Free PMC article.

6

Rootstock effects on scion phenotypes in a 'Chambourcin' experimental vineyard.

Migicovsky Z, Harris ZN, Klein LL, Li M, McDermaid A, Chitwood DH, Fennell A, Kovacs LG, Kwasniewski M, Londo JP, Ma Q, Miller AJ. Migicovsky Z, et al. Among authors: fennell a. Hortic Res. 2019 May 1;6:64. doi: 10.1038/s41438-019-0146-2. eCollection 2019. Hortic Res. 2019. PMID: 31069086 Free PMC article.

7

Water Deficit Transcriptomic Responses Differ in the Invasive Tamarix chinensis and T. ramosissima Established in the Southern and Northern United States.

Swaminathan P, Ohrtman M, Carinder A, Deuja A, Wang C, Gaskin J, Fennell A, Clay S. Swaminathan P, et al. Among authors: fennell a. Plants (Basel). 2020 Jan 9;9(1):86. doi: 10.3390/plants9010086. Plants (Basel). 2020. PMID: 31936615 Free PMC article.

8

Multi-dimensional leaf phenotypes reflect root system genotype in grafted grapevine over the growing season.

Harris ZN, Awale M, Bhakta N, Chitwood DH, Fennell A, Frawley E, Klein LL, Kovacs LG, Kwasniewski M, Londo JP, Ma Q, Migicovsky Z, Swift JF, Miller AJ. Harris ZN, et al. Among authors: fennell a. Gigascience. 2021 Dec 29;10(12):giab087. doi: 10.1093/gigascience/giab087. Gigascience. 2021. PMID: 34966928 Free PMC article.

9

Increases in vein length compensate for leaf area lost to lobing in grapevine.

Migicovsky Z, Swift JF, Helget Z, Klein LL, Ly A, Maimaitiyiming M, Woodhouse K, Fennell A, Kwasniewski M, Miller AJ, Cousins P, Chitwood DH. Migicovsky Z, et al. Among authors: fennell a. Am J Bot. 2022 Jul;109(7):1063-1073. doi: 10.1002/ajb2.16033. Epub 2022 Jul 19. Am J Bot. 2022. PMID: 35851467 Free PMC article.

10

Genome assembly of the hybrid grapevine Vitis 'Chambourcin'.

Patel S, Harris ZN, Londo JP, Miller A, Fennell A. Patel S, et al. Among authors: fennell a. GigaByte. 2023 Jul 3;2023:gigabyte84. doi: 10.46471/gigabyte.84. eCollection 2023. GigaByte. 2023. PMID: 37408731 Free PMC article.

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