Smith JM - Search Results

1

Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column.

Reji L, Tolar BB, Smith JM, Chavez FP, Francis CA. Reji L, et al. Among authors: smith jm. ISME J. 2019 May;13(5):1144-1158. doi: 10.1038/s41396-018-0311-x. Epub 2019 Jan 4. ISME J. 2019. PMID: 30610232 Free PMC article.

2

Depth distributions of nitrite reductase (nirK) gene variants reveal spatial dynamics of thaumarchaeal ecotype populations in coastal Monterey Bay.

Reji L, Tolar BB, Smith JM, Chavez FP, Francis CA. Reji L, et al. Among authors: smith jm. Environ Microbiol. 2019 Nov;21(11):4032-4045. doi: 10.1111/1462-2920.14753. Epub 2019 Aug 9. Environ Microbiol. 2019. PMID: 31330081

3

Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea.

Lund MB, Smith JM, Francis CA. Lund MB, et al. Among authors: smith jm. ISME J. 2012 Oct;6(10):1966-77. doi: 10.1038/ismej.2012.40. Epub 2012 May 17. ISME J. 2012. PMID: 22592819 Free PMC article.

4

Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters.

Smith JM, Casciotti KL, Chavez FP, Francis CA. Smith JM, et al. ISME J. 2014 Aug;8(8):1704-14. doi: 10.1038/ismej.2014.11. Epub 2014 Feb 20. ISME J. 2014. PMID: 24553472 Free PMC article.

5

Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean.

Sudek S, Everroad RC, Gehman AL, Smith JM, Poirier CL, Chavez FP, Worden AZ. Sudek S, et al. Among authors: smith jm. Environ Microbiol. 2015 Oct;17(10):3692-707. doi: 10.1111/1462-2920.12742. Epub 2015 Mar 6. Environ Microbiol. 2015. PMID: 25522910

6

Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

Aylward FO, Eppley JM, Smith JM, Chavez FP, Scholin CA, DeLong EF. Aylward FO, et al. Among authors: smith jm. Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):5443-8. doi: 10.1073/pnas.1502883112. Epub 2015 Mar 9. Proc Natl Acad Sci U S A. 2015. PMID: 25775583 Free PMC article.

7

Ammonium uptake by phytoplankton regulates nitrification in the sunlit ocean.

Smith JM, Chavez FP, Francis CA. Smith JM, et al. PLoS One. 2014 Sep 24;9(9):e108173. doi: 10.1371/journal.pone.0108173. eCollection 2014. PLoS One. 2014. PMID: 25251022 Free PMC article.

8

Spatiotemporal relationships between the abundance, distribution, and potential activities of ammonia-oxidizing and denitrifying microorganisms in intertidal sediments.

Smith JM, Mosier AC, Francis CA. Smith JM, et al. Microb Ecol. 2015 Jan;69(1):13-24. doi: 10.1007/s00248-014-0450-1. Epub 2014 Jul 20. Microb Ecol. 2015. PMID: 25038845

9

Benthic ammonia oxidizers differ in community structure and biogeochemical potential across a riverine delta.

Damashek J, Smith JM, Mosier AC, Francis CA. Damashek J, et al. Among authors: smith jm. Front Microbiol. 2015 Jan 8;5:743. doi: 10.3389/fmicb.2014.00743. eCollection 2014. Front Microbiol. 2015. PMID: 25620958 Free PMC article.

10

Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean.

Orsi WD, Smith JM, Liu S, Liu Z, Sakamoto CM, Wilken S, Poirier C, Richards TA, Keeling PJ, Worden AZ, Santoro AE. Orsi WD, et al. Among authors: smith jm. ISME J. 2016 Sep;10(9):2158-73. doi: 10.1038/ismej.2016.20. Epub 2016 Mar 8. ISME J. 2016. PMID: 26953597 Free PMC article.

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