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Inferring whole-genome histories in large population datasets.
Kelleher J, Wong Y, Wohns AW, Fadil C, Albers PK, McVean G. Kelleher J, et al. Nat Genet. 2019 Sep;51(9):1330-1338. doi: 10.1038/s41588-019-0483-y. Epub 2019 Sep 2. Nat Genet. 2019. PMID: 31477934 Free PMC article.
Coalescent Simulation with msprime.
Kelleher J, Lohse K. Kelleher J, et al. Methods Mol Biol. 2020;2090:191-230. doi: 10.1007/978-1-0716-0199-0_9. Methods Mol Biol. 2020. PMID: 31975169
A community-maintained standard library of population genetic models.
Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, McKenzie P, Messer PW, Noskova E, Ortega-Del Vecchyo D, Racimo F, Struck TJ, Gravel S, Gutenkunst RN, Lohmueller KE, Ralph PL, Schrider DR, Siepel A, Kelleher J, Kern AD. Adrion JR, et al. Among authors: kelleher j. Elife. 2020 Jun 23;9:e54967. doi: 10.7554/eLife.54967. Elife. 2020. PMID: 32573438 Free PMC article.
Lessons Learned from Bugs in Models of Human History.
Ragsdale AP, Nelson D, Gravel S, Kelleher J. Ragsdale AP, et al. Among authors: kelleher j. Am J Hum Genet. 2020 Oct 1;107(4):583-588. doi: 10.1016/j.ajhg.2020.08.017. Am J Hum Genet. 2020. PMID: 33007197 Free PMC article.
Efficient ancestry and mutation simulation with msprime 1.0.
Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschumar WW, Lohse K, Matschiner M, Nelson D, Pope NS, Quinto-Cortés CD, Rodrigues MF, Saunack K, Sellinger T, Thornton K, van Kemenade H, Wohns AW, Wong Y, Gravel S, Kern AD, Koskela J, Ralph PL, Kelleher J. Baumdicker F, et al. Among authors: kelleher j. Genetics. 2022 Mar 3;220(3):iyab229. doi: 10.1093/genetics/iyab229. Genetics. 2022. PMID: 34897427 Free PMC article.
A unified genealogy of modern and ancient genomes.
Wohns AW, Wong Y, Jeffery B, Akbari A, Mallick S, Pinhasi R, Patterson N, Reich D, Kelleher J, McVean G. Wohns AW, et al. Among authors: kelleher j. Science. 2022 Feb 25;375(6583):eabi8264. doi: 10.1126/science.abi8264. Epub 2022 Feb 25. Science. 2022. PMID: 35201891 Free PMC article.
573 results