Podkorytov IS - Search Results

1

What Drives ¹⁵N Spin Relaxation in Disordered Proteins? Combined NMR/MD Study of the H4 Histone Tail.

Kämpf K, Izmailov SA, Rabdano SO, Groves AT, Podkorytov IS, Skrynnikov NR. Kämpf K, et al. Among authors: podkorytov is. Biophys J. 2018 Dec 18;115(12):2348-2367. doi: 10.1016/j.bpj.2018.11.017. Epub 2018 Nov 20. Biophys J. 2018. PMID: 30527335 Free PMC article.

2

Microsecond time-scale dynamics from relaxation in the rotating frame: experiments using spin lock with alternating phase.

Podkorytov IS, Skrynnikov NR. Podkorytov IS, et al. J Magn Reson. 2004 Jul;169(1):164-73. doi: 10.1016/j.jmr.2004.04.011. J Magn Reson. 2004. PMID: 15183365

3

Transient NOE-exchange-relay experiment: application to ligand-protein binding under slow exchange conditions.

Podkorytov IS, Skrynnikov NR. Podkorytov IS, et al. J Magn Reson. 2007 Jul;187(1):44-51. doi: 10.1016/j.jmr.2007.02.016. Epub 2007 Mar 24. J Magn Reson. 2007. PMID: 17449307

4

Paramagnetic relaxation enhancements in unfolded proteins: theory and application to drkN SH3 domain.

Xue Y, Podkorytov IS, Rao DK, Benjamin N, Sun H, Skrynnikov NR. Xue Y, et al. Among authors: podkorytov is. Protein Sci. 2009 Jul;18(7):1401-24. doi: 10.1002/pro.153. Protein Sci. 2009. PMID: 19544584 Free PMC article.

5

Microsecond time-scale conformational exchange in proteins: using long molecular dynamics trajectory to simulate NMR relaxation dispersion data.

Xue Y, Ward JM, Yuwen T, Podkorytov IS, Skrynnikov NR. Xue Y, et al. Among authors: podkorytov is. J Am Chem Soc. 2012 Feb 8;134(5):2555-62. doi: 10.1021/ja206442c. Epub 2012 Jan 27. J Am Chem Soc. 2012. PMID: 22206299

6

Origin of anti-tumor activity of the cysteine-containing GO peptides and further optimization of their cytotoxic properties.

Tyuryaeva II, Lyublinskaya OG, Podkorytov IS, Skrynnikov NR. Tyuryaeva II, et al. Among authors: podkorytov is. Sci Rep. 2017 Jan 16;7:40217. doi: 10.1038/srep40217. Sci Rep. 2017. PMID: 28091523 Free PMC article.

7

Simple MD-based model for oxidative folding of peptides and proteins.

Izmailov SA, Podkorytov IS, Skrynnikov NR. Izmailov SA, et al. Among authors: podkorytov is. Sci Rep. 2017 Aug 24;7(1):9293. doi: 10.1038/s41598-017-09229-7. Sci Rep. 2017. PMID: 28839177 Free PMC article.

8

Onset of disorder and protein aggregation due to oxidation-induced intermolecular disulfide bonds: case study of RRM2 domain from TDP-43.

Rabdano SO, Izmailov SA, Luzik DA, Groves A, Podkorytov IS, Skrynnikov NR. Rabdano SO, et al. Among authors: podkorytov is. Sci Rep. 2017 Sep 11;7(1):11161. doi: 10.1038/s41598-017-10574-w. Sci Rep. 2017. PMID: 28894122 Free PMC article.

9

Structural and dynamic origins of ESR lineshapes in spin-labeled GB1 domain: the insights from spin dynamics simulations based on long MD trajectories.

Izmailov SA, Rabdano SO, Hasanbasri Z, Podkorytov IS, Saxena S, Skrynnikov NR. Izmailov SA, et al. Among authors: podkorytov is. Sci Rep. 2020 Jan 22;10(1):957. doi: 10.1038/s41598-019-56750-y. Sci Rep. 2020. PMID: 31969574 Free PMC article.

10

Insights into Ubiquitin Product Release in Hydrolysis Catalyzed by the Bacterial Deubiquitinase SdeA.

Sheedlo MJ, Kenny S, Podkorytov IS, Brown K, Ma J, Iyer S, Hewitt CS, Arbough T, Mikhailovskii O, Flaherty DP, Wilson MA, Skrynnikov NR, Das C. Sheedlo MJ, et al. Among authors: podkorytov is. Biochemistry. 2021 Mar 2;60(8):584-596. doi: 10.1021/acs.biochem.0c00760. Epub 2021 Feb 14. Biochemistry. 2021. PMID: 33583181 Free PMC article.

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