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Identification and quantification of defective virus genomes in high throughput sequencing data using DVG-profiler, a novel post-sequence alignment processing algorithm.
Bosma TJ, Karagiannis K, Santana-Quintero L, Ilyushina N, Zagorodnyaya T, Petrovskaya S, Laassri M, Donnelly RP, Rubin S, Simonyan V, Sauder CJ. Bosma TJ, et al. PLoS One. 2019 May 17;14(5):e0216944. doi: 10.1371/journal.pone.0216944. eCollection 2019. PLoS One. 2019. PMID: 31100083 Free PMC article.
High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis.
Simonyan V, Chumakov K, Dingerdissen H, Faison W, Goldweber S, Golikov A, Gulzar N, Karagiannis K, Vinh Nguyen Lam P, Maudru T, Muravitskaja O, Osipova E, Pan Y, Pschenichnov A, Rostovtsev A, Santana-Quintero L, Smith K, Thompson EE, Tkachenko V, Torcivia-Rodriguez J, Voskanian A, Wan Q, Wang J, Wu TJ, Wilson C, Mazumder R. Simonyan V, et al. Database (Oxford). 2016 Mar 17;2016:baw022. doi: 10.1093/database/baw022. Print 2016. Database (Oxford). 2016. PMID: 26989153 Free PMC article.
A new and updated resource for codon usage tables.
Athey J, Alexaki A, Osipova E, Rostovtsev A, Santana-Quintero LV, Katneni U, Simonyan V, Kimchi-Sarfaty C. Athey J, et al. Among authors: santana quintero lv. BMC Bioinformatics. 2017 Sep 2;18(1):391. doi: 10.1186/s12859-017-1793-7. BMC Bioinformatics. 2017. PMID: 28865429 Free PMC article.
17 results