Morris JH - Search Results

1

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.

Szklarczyk D, Gable AL, Lyon D, Junge A, Wyder S, Huerta-Cepas J, Simonovic M, Doncheva NT, Morris JH, Bork P, Jensen LJ, Mering CV. Szklarczyk D, et al. Among authors: morris jh. Nucleic Acids Res. 2019 Jan 8;47(D1):D607-D613. doi: 10.1093/nar/gky1131. Nucleic Acids Res. 2019. PMID: 30476243 Free PMC article.

2

Integrative visual analysis of protein sequence mutations.

Doncheva NT, Klein K, Morris JH, Wybrow M, Domingues FS, Albrecht M. Doncheva NT, et al. Among authors: morris jh. BMC Proc. 2014 Aug 28;8(Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica):S2. doi: 10.1186/1753-6561-8-S2-S2. eCollection 2014. BMC Proc. 2014. PMID: 25237389 Free PMC article.

3

setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges.

Morris JH, Lotia S, Wu A, Doncheva NT, Albrecht M, Pico AR, Ferrin TE. Morris JH, et al. F1000Res. 2014 Jul 1;3:149. doi: 10.12688/f1000research.4392.2. eCollection 2014. F1000Res. 2014. PMID: 25352980 Free PMC article.

4

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Szklarczyk D, Morris JH, Cook H, Kuhn M, Wyder S, Simonovic M, Santos A, Doncheva NT, Roth A, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: morris jh. Nucleic Acids Res. 2017 Jan 4;45(D1):D362-D368. doi: 10.1093/nar/gkw937. Epub 2016 Oct 18. Nucleic Acids Res. 2017. PMID: 27924014 Free PMC article.

5

Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.

Doncheva NT, Morris JH, Gorodkin J, Jensen LJ. Doncheva NT, et al. Among authors: morris jh. J Proteome Res. 2019 Feb 1;18(2):623-632. doi: 10.1021/acs.jproteome.8b00702. Epub 2018 Dec 5. J Proteome Res. 2019. PMID: 30450911 Free PMC article.

6

Visualize omics data on networks with Omics Visualizer, a Cytoscape App.

Legeay M, Doncheva NT, Morris JH, Jensen LJ. Legeay M, et al. Among authors: morris jh. F1000Res. 2020 Feb 28;9:157. doi: 10.12688/f1000research.22280.2. eCollection 2020. F1000Res. 2020. PMID: 32399202 Free PMC article.

7

U-CIE [/juː 'siː/]: Color encoding of high-dimensional data.

Koutrouli M, Morris JH, Jensen LJ. Koutrouli M, et al. Among authors: morris jh. Protein Sci. 2022 Sep;31(9):e4388. doi: 10.1002/pro.4388. Protein Sci. 2022. PMID: 36040253 Free PMC article.

8

Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks.

Doncheva NT, Morris JH, Holze H, Kirsch R, Nastou KC, Cuesta-Astroz Y, Rattei T, Szklarczyk D, von Mering C, Jensen LJ. Doncheva NT, et al. Among authors: morris jh. J Proteome Res. 2023 Feb 3;22(2):637-646. doi: 10.1021/acs.jproteome.2c00651. Epub 2022 Dec 13. J Proteome Res. 2023. PMID: 36512705 Free PMC article.

9

Functional Analysis of MS-Based Proteomics Data: From Protein Groups to Networks.

Locard-Paulet M, Doncheva NT, Morris JH, Jensen LJ. Locard-Paulet M, et al. Among authors: morris jh. Mol Cell Proteomics. 2024 Dec;23(12):100871. doi: 10.1016/j.mcpro.2024.100871. Epub 2024 Oct 31. Mol Cell Proteomics. 2024. PMID: 39486590 Free PMC article.

10

The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse.

Nord AS, Chang PJ, Conklin BR, Cox AV, Harper CA, Hicks GG, Huang CC, Johns SJ, Kawamoto M, Liu S, Meng EC, Morris JH, Rossant J, Ruiz P, Skarnes WC, Soriano P, Stanford WL, Stryke D, von Melchner H, Wurst W, Yamamura K, Young SG, Babbitt PC, Ferrin TE. Nord AS, et al. Among authors: morris jh. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D642-8. doi: 10.1093/nar/gkj097. Nucleic Acids Res. 2006. PMID: 16381950 Free PMC article.

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