Zhang K - Search Results

1

Mapping Cellular Reprogramming via Pooled Overexpression Screens with Paired Fitness and Single-Cell RNA-Sequencing Readout.

Parekh U, Wu Y, Zhao D, Worlikar A, Shah N, Zhang K, Mali P. Parekh U, et al. Among authors: zhang k. Cell Syst. 2018 Nov 28;7(5):548-555.e8. doi: 10.1016/j.cels.2018.10.008. Epub 2018 Nov 14. Cell Syst. 2018. PMID: 30448000 Free PMC article.

2

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.

Lake BB, Ai R, Kaeser GE, Salathia NS, Yung YC, Liu R, Wildberg A, Gao D, Fung HL, Chen S, Vijayaraghavan R, Wong J, Chen A, Sheng X, Kaper F, Shen R, Ronaghi M, Fan JB, Wang W, Chun J, Zhang K. Lake BB, et al. Among authors: zhang k. Science. 2016 Jun 24;352(6293):1586-90. doi: 10.1126/science.aaf1204. Science. 2016. PMID: 27339989 Free PMC article.

3

The Homeobox Transcription Factor RHOX10 Drives Mouse Spermatogonial Stem Cell Establishment.

Song HW, Bettegowda A, Lake BB, Zhao AH, Skarbrevik D, Babajanian E, Sukhwani M, Shum EY, Phan MH, Plank TM, Richardson ME, Ramaiah M, Sridhar V, de Rooij DG, Orwig KE, Zhang K, Wilkinson MF. Song HW, et al. Among authors: zhang k. Cell Rep. 2016 Sep 27;17(1):149-164. doi: 10.1016/j.celrep.2016.08.090. Cell Rep. 2016. PMID: 27681428 Free PMC article.

4

Gel-seq: whole-genome and transcriptome sequencing by simultaneous low-input DNA and RNA library preparation using semi-permeable hydrogel barriers.

Hoople GD, Richards A, Wu Y, Kaneko K, Luo X, Feng GS, Zhang K, Pisano AP. Hoople GD, et al. Among authors: zhang k. Lab Chip. 2017 Jul 25;17(15):2619-2630. doi: 10.1039/c7lc00430c. Lab Chip. 2017. PMID: 28660979 Free article.

5

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA.

Lake BB, Codeluppi S, Yung YC, Gao D, Chun J, Kharchenko PV, Linnarsson S, Zhang K. Lake BB, et al. Among authors: zhang k. Sci Rep. 2017 Jul 20;7(1):6031. doi: 10.1038/s41598-017-04426-w. Sci Rep. 2017. PMID: 28729663 Free PMC article.

6

Gel-seq: A Method for Simultaneous Sequencing Library Preparation of DNA and RNA Using Hydrogel Matrices.

Hoople GD, Richards A, Wu Y, Pisano AP, Zhang K. Hoople GD, et al. Among authors: zhang k. J Vis Exp. 2018 Mar 26;(133):57315. doi: 10.3791/57315. J Vis Exp. 2018. PMID: 29630040 Free PMC article.

7

Visualizing and Interpreting Single-Cell Gene Expression Datasets with Similarity Weighted Nonnegative Embedding.

Wu Y, Tamayo P, Zhang K. Wu Y, et al. Among authors: zhang k. Cell Syst. 2018 Dec 26;7(6):656-666.e4. doi: 10.1016/j.cels.2018.10.015. Epub 2018 Dec 5. Cell Syst. 2018. PMID: 30528274 Free PMC article.

8

A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys.

Lake BB, Chen S, Hoshi M, Plongthongkum N, Salamon D, Knoten A, Vijayan A, Venkatesh R, Kim EH, Gao D, Gaut J, Zhang K, Jain S. Lake BB, et al. Among authors: zhang k. Nat Commun. 2019 Jun 27;10(1):2832. doi: 10.1038/s41467-019-10861-2. Nat Commun. 2019. PMID: 31249312 Free PMC article.

9

Cellular Recruitment by Podocyte-Derived Pro-migratory Factors in Assembly of the Human Renal Filter.

Kim AD, Lake BB, Chen S, Wu Y, Guo J, Parvez RK, Tran T, Thornton ME, Grubbs B, McMahon JA, Zhang K, McMahon AP. Kim AD, et al. Among authors: zhang k. iScience. 2019 Oct 25;20:402-414. doi: 10.1016/j.isci.2019.09.029. Epub 2019 Sep 26. iScience. 2019. PMID: 31622881 Free PMC article.

10

Tools for the analysis of high-dimensional single-cell RNA sequencing data.

Wu Y, Zhang K. Wu Y, et al. Among authors: zhang k. Nat Rev Nephrol. 2020 Jul;16(7):408-421. doi: 10.1038/s41581-020-0262-0. Epub 2020 Mar 27. Nat Rev Nephrol. 2020. PMID: 32221477 Review.

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