Das R - Search Results

1

De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes.

Kappel K, Liu S, Larsen KP, Skiniotis G, Puglisi EV, Puglisi JD, Zhou ZH, Zhao R, Das R. Kappel K, et al. Among authors: das r. Nat Methods. 2018 Nov;15(11):947-954. doi: 10.1038/s41592-018-0172-2. Epub 2018 Oct 30. Nat Methods. 2018. PMID: 30377372 Free PMC article.

2

Atomic accuracy in predicting and designing noncanonical RNA structure.

Das R, Karanicolas J, Baker D. Das R, et al. Nat Methods. 2010 Apr;7(4):291-4. doi: 10.1038/nmeth.1433. Epub 2010 Feb 28. Nat Methods. 2010. PMID: 20190761 Free PMC article.

3

A two-dimensional mutate-and-map strategy for non-coding RNA structure.

Kladwang W, VanLang CC, Cordero P, Das R. Kladwang W, et al. Among authors: das r. Nat Chem. 2011 Oct 30;3(12):954-62. doi: 10.1038/nchem.1176. Nat Chem. 2011. PMID: 22109276 Free PMC article.

4

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling.

Sripakdeevong P, Kladwang W, Das R. Sripakdeevong P, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20573-8. doi: 10.1073/pnas.1106516108. Epub 2011 Dec 5. Proc Natl Acad Sci U S A. 2011. PMID: 22143768 Free PMC article.

5

Correcting pervasive errors in RNA crystallography through enumerative structure prediction.

Chou FC, Sripakdeevong P, Dibrov SM, Hermann T, Das R. Chou FC, et al. Among authors: das r. Nat Methods. 2013 Jan;10(1):74-6. doi: 10.1038/nmeth.2262. Epub 2012 Dec 2. Nat Methods. 2013. PMID: 23202432 Free PMC article.

6

Structure determination of noncanonical RNA motifs guided by ¹H NMR chemical shifts.

Sripakdeevong P, Cevec M, Chang AT, Erat MC, Ziegeler M, Zhao Q, Fox GE, Gao X, Kennedy SD, Kierzek R, Nikonowicz EP, Schwalbe H, Sigel RK, Turner DH, Das R. Sripakdeevong P, et al. Among authors: das r. Nat Methods. 2014 Apr;11(4):413-6. doi: 10.1038/nmeth.2876. Epub 2014 Mar 2. Nat Methods. 2014. PMID: 24584194 Free PMC article.

7

RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation.

Xue S, Tian S, Fujii K, Kladwang W, Das R, Barna M. Xue S, et al. Among authors: das r. Nature. 2015 Jan 1;517(7532):33-8. doi: 10.1038/nature14010. Epub 2014 Nov 19. Nature. 2015. PMID: 25409156 Free PMC article.

8

Modeling complex RNA tertiary folds with Rosetta.

Cheng CY, Chou FC, Das R. Cheng CY, et al. Among authors: das r. Methods Enzymol. 2015;553:35-64. doi: 10.1016/bs.mie.2014.10.051. Epub 2015 Feb 12. Methods Enzymol. 2015. PMID: 25726460

9

RNA Structure Refinement Using the ERRASER-Phenix Pipeline.

Chou FC, Echols N, Terwilliger TC, Das R. Chou FC, et al. Among authors: das r. Methods Mol Biol. 2016;1320:269-82. doi: 10.1007/978-1-4939-2763-0_17. Methods Mol Biol. 2016. PMID: 26227049 Free PMC article.

10

Blind tests of RNA nearest-neighbor energy prediction.

Chou FC, Kladwang W, Kappel K, Das R. Chou FC, et al. Among authors: das r. Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):8430-5. doi: 10.1073/pnas.1523335113. Epub 2016 Jul 8. Proc Natl Acad Sci U S A. 2016. PMID: 27402765 Free PMC article.

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