Donald BR - Search Results

1

OSPREY 3.0: Open-source protein redesign for you, with powerful new features.

Hallen MA, Martin JW, Ojewole A, Jou JD, Lowegard AU, Frenkel MS, Gainza P, Nisonoff HM, Mukund A, Wang S, Holt GT, Zhou D, Dowd E, Donald BR. Hallen MA, et al. Among authors: donald br. J Comput Chem. 2018 Nov 15;39(30):2494-2507. doi: 10.1002/jcc.25522. Epub 2018 Oct 14. J Comput Chem. 2018. PMID: 30368845 Free PMC article.

2

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.

Georgiev I, Lilien RH, Donald BR. Georgiev I, et al. Among authors: donald br. J Comput Chem. 2008 Jul 30;29(10):1527-42. doi: 10.1002/jcc.20909. J Comput Chem. 2008. PMID: 18293294 Free PMC article.

3

A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.

Zeng J, Tripathy C, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. Comput Syst Bioinformatics Conf. 2008;7:169-81. Comput Syst Bioinformatics Conf. 2008. PMID: 19642278 Free article.

4

Automated NMR Assignment and Protein Structure Determination using Sparse Dipolar Coupling Constraints.

Donald BR, Martin J. Donald BR, et al. Prog Nucl Magn Reson Spectrosc. 2009 Aug 1;55(2):101-127. doi: 10.1016/j.pnmrs.2008.12.001. Prog Nucl Magn Reson Spectrosc. 2009. PMID: 20160991 Free PMC article. No abstract available.

5

A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers.

Martin JW, Yan AK, Bailey-Kellogg C, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. Protein Sci. 2011 Jun;20(6):970-85. doi: 10.1002/pro.620. Epub 2011 Apr 27. Protein Sci. 2011. PMID: 21413097 Free PMC article.

6

A Bayesian approach for determining protein side-chain rotamer conformations using unassigned NOE data.

Zeng J, Roberts KE, Zhou P, Donald BR. Zeng J, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1661-79. doi: 10.1089/cmb.2011.0172. Epub 2011 Oct 4. J Comput Biol. 2011. PMID: 21970619 Free PMC article.

7

A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Martin JW, Yan AK, Bailey-Kellogg C, Zhou P, Donald BR. Martin JW, et al. Among authors: donald br. J Comput Biol. 2011 Nov;18(11):1507-23. doi: 10.1089/cmb.2011.0173. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035328 Free PMC article.

8

Protein loop closure using orientational restraints from NMR data.

Tripathy C, Zeng J, Zhou P, Donald BR. Tripathy C, et al. Among authors: donald br. Proteins. 2012 Feb;80(2):433-53. doi: 10.1002/prot.23207. Epub 2011 Dec 13. Proteins. 2012. PMID: 22161780 Free PMC article.

9

Protein design using continuous rotamers.

Gainza P, Roberts KE, Donald BR. Gainza P, et al. Among authors: donald br. PLoS Comput Biol. 2012 Jan;8(1):e1002335. doi: 10.1371/journal.pcbi.1002335. Epub 2012 Jan 12. PLoS Comput Biol. 2012. PMID: 22279426 Free PMC article.

10

Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity.

Roberts KE, Cushing PR, Boisguerin P, Madden DR, Donald BR. Roberts KE, et al. Among authors: donald br. PLoS Comput Biol. 2012;8(4):e1002477. doi: 10.1371/journal.pcbi.1002477. Epub 2012 Apr 19. PLoS Comput Biol. 2012. PMID: 22532795 Free PMC article.

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