Zengler K - Search Results

1

Optimization of carbon and energy utilization through differential translational efficiency.

Al-Bassam MM, Kim JN, Zaramela LS, Kellman BP, Zuniga C, Wozniak JM, Gonzalez DJ, Zengler K. Al-Bassam MM, et al. Among authors: zengler k. Nat Commun. 2018 Oct 26;9(1):4474. doi: 10.1038/s41467-018-06993-6. Nat Commun. 2018. PMID: 30367068 Free PMC article.

2

Pathogenic Bacteroides fragilis strains can emerge from gut-resident commensals.

Oles RE, Terrazas MC, Loomis LR, Neal MJ, Paulchakrabarti M, Zuffa S, Hsu CY, Vasquez Ayala A, Lee MH, Tribelhorn C, Belda-Ferre P, Bryant M, Zemlin J, Young J, Dulai P, Sandborn WJ, Sivagnanam M, Raffatellu M, Pride D, Dorrestein PC, Zengler K, Choudhury B, Knight R, Chu H. Oles RE, et al. Among authors: zengler k. bioRxiv [Preprint]. 2024 Jun 19:2024.06.19.599758. doi: 10.1101/2024.06.19.599758. bioRxiv. 2024. PMID: 38948766 Free PMC article. Preprint.

3

The transcription unit architecture of the Escherichia coli genome.

Cho BK, Zengler K, Qiu Y, Park YS, Knight EM, Barrett CL, Gao Y, Palsson BØ. Cho BK, et al. Among authors: zengler k. Nat Biotechnol. 2009 Nov;27(11):1043-9. doi: 10.1038/nbt.1582. Epub 2009 Nov 1. Nat Biotechnol. 2009. PMID: 19881496 Free PMC article.

4

Deciphering the transcriptional regulatory logic of amino acid metabolism.

Cho BK, Federowicz S, Park YS, Zengler K, Palsson BØ. Cho BK, et al. Among authors: zengler k. Nat Chem Biol. 2011 Nov 13;8(1):65-71. doi: 10.1038/nchembio.710. Nat Chem Biol. 2011. PMID: 22082910 Free PMC article.

5

In silico method for modelling metabolism and gene product expression at genome scale.

Lerman JA, Hyduke DR, Latif H, Portnoy VA, Lewis NE, Orth JD, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Zengler K, Palsson BO. Lerman JA, et al. Among authors: zengler k. Nat Commun. 2012 Jul 3;3:929. doi: 10.1038/ncomms1928. Nat Commun. 2012. PMID: 22760628 Free PMC article.

6

The microbiome extends to subepidermal compartments of normal skin.

Nakatsuji T, Chiang HI, Jiang SB, Nagarajan H, Zengler K, Gallo RL. Nakatsuji T, et al. Among authors: zengler k. Nat Commun. 2013;4:1431. doi: 10.1038/ncomms2441. Nat Commun. 2013. PMID: 23385576 Free PMC article.

7

Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.

Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho BK, Elkins JG, Nevin KP, Barrett CL, Lovley DR, Palsson BO, Zengler K. Qiu Y, et al. Among authors: zengler k. Nat Commun. 2013;4:1755. doi: 10.1038/ncomms2743. Nat Commun. 2013. PMID: 23612296 Free article.

8

Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association.

Nagarajan H, Embree M, Rotaru AE, Shrestha PM, Feist AM, Palsson BØ, Lovley DR, Zengler K. Nagarajan H, et al. Among authors: zengler k. Nat Commun. 2013;4:2809. doi: 10.1038/ncomms3809. Nat Commun. 2013. PMID: 24264237 Free article.

9

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.

Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K. Nagarajan H, et al. Among authors: zengler k. Microb Cell Fact. 2013 Nov 25;12:118. doi: 10.1186/1475-2859-12-118. Microb Cell Fact. 2013. PMID: 24274140 Free PMC article.

10

Unraveling interactions in microbial communities - from co-cultures to microbiomes.

Tan J, Zuniga C, Zengler K. Tan J, et al. Among authors: zengler k. J Microbiol. 2015 May;53(5):295-305. doi: 10.1007/s12275-015-5060-1. Epub 2015 May 3. J Microbiol. 2015. PMID: 25935300 Review.

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