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Bioinformatic data processing pipelines in support of next-generation sequencing-based HIV drug resistance testing: the Winnipeg Consensus.
Ji H, Enns E, Brumme CJ, Parkin N, Howison M, Lee ER, Capina R, Marinier E, Avila-Rios S, Sandstrom P, Van Domselaar G, Harrigan R, Paredes R, Kantor R, Noguera-Julian M. Ji H, et al. Among authors: paredes r. J Int AIDS Soc. 2018 Oct;21(10):e25193. doi: 10.1002/jia2.25193. J Int AIDS Soc. 2018. PMID: 30350345 Free PMC article.
Next-generation sequencing to assess HIV tropism.
Swenson LC, Däumer M, Paredes R. Swenson LC, et al. Among authors: paredes r. Curr Opin HIV AIDS. 2012 Sep;7(5):478-85. doi: 10.1097/COH.0b013e328356e9da. Curr Opin HIV AIDS. 2012. PMID: 22832710 Review.
RECall for automated genotypic tropism testing.
Pou C, Bellido R, Casadellà M, Puig T, Clotet B, Harrigan R, Paredes R. Pou C, et al. Among authors: paredes r. J Clin Microbiol. 2013 Aug;51(8):2754-7. doi: 10.1128/JCM.00935-13. Epub 2013 Jun 12. J Clin Microbiol. 2013. PMID: 23761150 Free PMC article.
HIV-1 tropism testing in subjects achieving undetectable HIV-1 RNA: diagnostic accuracy, viral evolution and compartmentalization.
Pou C, Codoñer FM, Thielen A, Bellido R, Pérez-Álvarez S, Cabrera C, Dalmau J, Curriu M, Lie Y, Noguera-Julian M, Puig J, Martínez-Picado J, Blanco J, Coakley E, Däumer M, Clotet B, Paredes R. Pou C, et al. Among authors: paredes r. PLoS One. 2013 Aug 1;8(8):e67085. doi: 10.1371/journal.pone.0067085. Print 2013. PLoS One. 2013. PMID: 23936293 Free PMC article.
An international multicenter study on HIV-1 drug resistance testing by 454 ultra-deep pyrosequencing.
Simen BB, Braverman MS, Abbate I, Aerssens J, Bidet Y, Bouchez O, Gabriel C, Izopet J, Kessler HH, Stelzl E, Di Giallonardo F, Schlapbach R, Radonic A, Paredes R, Recordon-Pinson P, Sakwa J, St John EP, Schmitz-Agheguian GG, Metzner KJ, Däumer MP; 454 HIV Alphastudy Group. Simen BB, et al. Among authors: paredes r. J Virol Methods. 2014 Aug;204:31-7. doi: 10.1016/j.jviromet.2014.04.007. Epub 2014 Apr 13. J Virol Methods. 2014. PMID: 24731928
Improved prediction of salvage antiretroviral therapy outcomes using ultrasensitive HIV-1 drug resistance testing.
Pou C, Noguera-Julian M, Pérez-Álvarez S, García F, Delgado R, Dalmau D, Álvarez-Tejado M, Gonzalez D, Sayada C, Chueca N, Pulido F, Ibáñez L, Rodríguez C, Casadellà M, Santos JR, Ruiz L, Clotet B, Paredes R. Pou C, et al. Among authors: paredes r. Clin Infect Dis. 2014 Aug 15;59(4):578-88. doi: 10.1093/cid/ciu287. Epub 2014 May 29. Clin Infect Dis. 2014. PMID: 24879788 Clinical Trial.
742 results