Portella G - Search Results

1

5-Formylcytosine organizes nucleosomes and forms Schiff base interactions with histones in mouse embryonic stem cells.

Raiber EA, Portella G, Martínez Cuesta S, Hardisty R, Murat P, Li Z, Iurlaro M, Dean W, Spindel J, Beraldi D, Liu Z, Dawson MA, Reik W, Balasubramanian S. Raiber EA, et al. Among authors: portella g. Nat Chem. 2018 Dec;10(12):1258-1266. doi: 10.1038/s41557-018-0149-x. Epub 2018 Oct 22. Nat Chem. 2018. PMID: 30349137 Free article.

2

G-quadruplex DNA structures in human stem cells and differentiation.

Zyner KG, Simeone A, Flynn SM, Doyle C, Marsico G, Adhikari S, Portella G, Tannahill D, Balasubramanian S. Zyner KG, et al. Among authors: portella g. Nat Commun. 2022 Jan 10;13(1):142. doi: 10.1038/s41467-021-27719-1. Nat Commun. 2022. PMID: 35013231 Free PMC article.

3

RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.

Murat P, Marsico G, Herdy B, Ghanbarian AT, Portella G, Balasubramanian S. Murat P, et al. Among authors: portella g. Genome Biol. 2018 Dec 27;19(1):229. doi: 10.1186/s13059-018-1602-2. Genome Biol. 2018. PMID: 30591072 Free PMC article.

4

Correction to: RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.

Murat P, Marsico G, Herdy B, Ghanbarian AT, Portella G, Balasubramanian S. Murat P, et al. Among authors: portella g. Genome Biol. 2019 Jan 11;20(1):11. doi: 10.1186/s13059-019-1623-5. Genome Biol. 2019. PMID: 30635026 Free PMC article.

5

Correction to: RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.

Murat P, Marsico G, Herdy B, Ghanbarian AT, Portella G, Balasubramanian S. Murat P, et al. Among authors: portella g. Genome Biol. 2019 Jun 18;20(1):124. doi: 10.1186/s13059-019-1737-9. Genome Biol. 2019. PMID: 31215477 Free PMC article.

6

Parmbsc1: a refined force field for DNA simulations.

Ivani I, Dans PD, Noy A, Pérez A, Faustino I, Hospital A, Walther J, Andrio P, Goñi R, Balaceanu A, Portella G, Battistini F, Gelpí JL, González C, Vendruscolo M, Laughton CA, Harris SA, Case DA, Orozco M. Ivani I, et al. Among authors: portella g. Nat Methods. 2016 Jan;13(1):55-8. doi: 10.1038/nmeth.3658. Epub 2015 Nov 16. Nat Methods. 2016. PMID: 26569599 Free PMC article.

7

Emergence of chromatin hierarchical loops from protein disorder and nucleosome asymmetry.

Sridhar A, Farr SE, Portella G, Schlick T, Orozco M, Collepardo-Guevara R. Sridhar A, et al. Among authors: portella g. Proc Natl Acad Sci U S A. 2020 Mar 31;117(13):7216-7224. doi: 10.1073/pnas.1910044117. Epub 2020 Mar 12. Proc Natl Acad Sci U S A. 2020. PMID: 32165536 Free PMC article.

8

How accurate are accurate force-fields for B-DNA?

Dans PD, Ivani I, Hospital A, Portella G, González C, Orozco M. Dans PD, et al. Among authors: portella g. Nucleic Acids Res. 2017 Apr 20;45(7):4217-4230. doi: 10.1093/nar/gkw1355. Nucleic Acids Res. 2017. PMID: 28088759 Free PMC article.

9

Multiple routes to characterize the folding of a small DNA hairpin.

Portella G, Orozco M. Portella G, et al. Angew Chem Int Ed Engl. 2010 Oct 11;49(42):7673-6. doi: 10.1002/anie.201003816. Angew Chem Int Ed Engl. 2010. PMID: 20845348 No abstract available.

10

Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations.

Portella G, Battistini F, Orozco M. Portella G, et al. PLoS Comput Biol. 2013;9(11):e1003354. doi: 10.1371/journal.pcbi.1003354. Epub 2013 Nov 21. PLoS Comput Biol. 2013. PMID: 24278005 Free PMC article.

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