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Statistical inference with a manifold-constrained RNA velocity model uncovers cell cycle speed modulations.
Lederer AR, Leonardi M, Talamanca L, Herrera A, Droin C, Khven I, Carvalho HJF, Valente A, Mantes AD, Arabí PM, Pinello L, Naef F, Manno G. Lederer AR, et al. Among authors: naef f. bioRxiv [Preprint]. 2024 Jan 22:2024.01.18.576093. doi: 10.1101/2024.01.18.576093. bioRxiv. 2024. Update in: Nat Methods. 2024 Dec;21(12):2271-2286. doi: 10.1038/s41592-024-02471-8 PMID: 38328127 Free PMC article. Updated. Preprint.
The circadian clock coordinates ribosome biogenesis.
Jouffe C, Cretenet G, Symul L, Martin E, Atger F, Naef F, Gachon F. Jouffe C, et al. Among authors: naef f. PLoS Biol. 2013;11(1):e1001455. doi: 10.1371/journal.pbio.1001455. Epub 2013 Jan 3. PLoS Biol. 2013. PMID: 23300384 Free PMC article.
Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver.
Wang J, Mauvoisin D, Martin E, Atger F, Galindo AN, Dayon L, Sizzano F, Palini A, Kussmann M, Waridel P, Quadroni M, Dulić V, Naef F, Gachon F. Wang J, et al. Among authors: naef f. Cell Metab. 2017 Jan 10;25(1):102-117. doi: 10.1016/j.cmet.2016.10.003. Epub 2016 Nov 3. Cell Metab. 2017. PMID: 27818260 Free PMC article.
Transcriptional regulatory logic of the diurnal cycle in the mouse liver.
Sobel JA, Krier I, Andersin T, Raghav S, Canella D, Gilardi F, Kalantzi AS, Rey G, Weger B, Gachon F, Dal Peraro M, Hernandez N, Schibler U, Deplancke B, Naef F; CycliX consortium. Sobel JA, et al. Among authors: naef f. PLoS Biol. 2017 Apr 17;15(4):e2001069. doi: 10.1371/journal.pbio.2001069. eCollection 2017 Apr. PLoS Biol. 2017. PMID: 28414715 Free PMC article.
117 results