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Inferring viral quasispecies spectra from 454 pyrosequencing reads.
Astrovskaya I, Tork B, Mangul S, Westbrooks K, Măndoiu I, Balfe P, Zelikovsky A. Astrovskaya I, et al. Among authors: zelikovsky a. BMC Bioinformatics. 2011;12 Suppl 6(Suppl 6):S1. doi: 10.1186/1471-2105-12-S6-S1. Epub 2011 Jul 28. BMC Bioinformatics. 2011. PMID: 21989211 Free PMC article.
Efficient error correction for next-generation sequencing of viral amplicons.
Skums P, Dimitrova Z, Campo DS, Vaughan G, Rossi L, Forbi JC, Yokosawa J, Zelikovsky A, Khudyakov Y. Skums P, et al. Among authors: zelikovsky a. BMC Bioinformatics. 2012 Jun 25;13 Suppl 10(Suppl 10):S6. doi: 10.1186/1471-2105-13-S10-S6. BMC Bioinformatics. 2012. PMID: 22759430 Free PMC article.
Reconstructing viral quasispecies from NGS amplicon reads.
Mancuso N, Tork B, Skums P, Ganova-Raeva L, Măndoiu I, Zelikovsky A. Mancuso N, et al. Among authors: zelikovsky a. In Silico Biol. 2011-2012;11(5-6):237-49. doi: 10.3233/ISB-2012-0458. In Silico Biol. 2011. PMID: 23202425
Accurate viral population assembly from ultra-deep sequencing data.
Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. Mangul S, et al. Among authors: zelikovsky a. Bioinformatics. 2014 Jun 15;30(12):i329-37. doi: 10.1093/bioinformatics/btu295. Bioinformatics. 2014. PMID: 24932001 Free PMC article.
105 results