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Standard operating procedure for somatic variant refinement of sequencing data with paired tumor and normal samples.
Barnell EK, Ronning P, Campbell KM, Krysiak K, Ainscough BJ, Sheta LM, Pema SP, Schmidt AD, Richters M, Cotto KC, Danos AM, Ramirez C, Skidmore ZL, Spies NC, Hundal J, Sediqzad MS, Kunisaki J, Gomez F, Trani L, Matlock M, Wagner AH, Swamidass SJ, Griffith M, Griffith OL. Barnell EK, et al. Among authors: ronning p. Genet Med. 2019 Apr;21(4):972-981. doi: 10.1038/s41436-018-0278-z. Epub 2018 Oct 5. Genet Med. 2019. PMID: 30287923 Free PMC article.
In silico epitope prediction analyses highlight the potential for distracting antigen immunodominance with allogeneic cancer vaccines.
James CA, Ronning P, Cullinan D, Cotto KC, Barnell EK, Campbell KM, Skidmore ZL, Sanford DE, Goedegebuure SP, Gillanders WE, Griffith OL, Hawkins WG, Griffith M. James CA, et al. Among authors: ronning p. Cancer Res Commun. 2021 Nov;1(2):115-126. doi: 10.1158/2767-9764.crc-21-0029. Cancer Res Commun. 2021. PMID: 35611186 Free PMC article.
Proteogenomic characterization of pancreatic ductal adenocarcinoma.
Cao L, Huang C, Cui Zhou D, Hu Y, Lih TM, Savage SR, Krug K, Clark DJ, Schnaubelt M, Chen L, da Veiga Leprevost F, Eguez RV, Yang W, Pan J, Wen B, Dou Y, Jiang W, Liao Y, Shi Z, Terekhanova NV, Cao S, Lu RJ, Li Y, Liu R, Zhu H, Ronning P, Wu Y, Wyczalkowski MA, Easwaran H, Danilova L, Mer AS, Yoo S, Wang JM, Liu W, Haibe-Kains B, Thiagarajan M, Jewell SD, Hostetter G, Newton CJ, Li QK, Roehrl MH, Fenyö D, Wang P, Nesvizhskii AI, Mani DR, Omenn GS, Boja ES, Mesri M, Robles AI, Rodriguez H, Bathe OF, Chan DW, Hruban RH, Ding L, Zhang B, Zhang H; Clinical Proteomic Tumor Analysis Consortium. Cao L, et al. Among authors: ronning p. Cell. 2021 Sep 16;184(19):5031-5052.e26. doi: 10.1016/j.cell.2021.08.023. Cell. 2021. PMID: 34534465 Free PMC article.
PVT1 dependence in cancer with MYC copy-number increase.
Tseng YY, Moriarity BS, Gong W, Akiyama R, Tiwari A, Kawakami H, Ronning P, Reuland B, Guenther K, Beadnell TC, Essig J, Otto GM, O'Sullivan MG, Largaespada DA, Schwertfeger KL, Marahrens Y, Kawakami Y, Bagchi A. Tseng YY, et al. Among authors: ronning p. Nature. 2014 Aug 7;512(7512):82-6. doi: 10.1038/nature13311. Epub 2014 Jun 22. Nature. 2014. PMID: 25043044 Free PMC article.
Prompt closure versus gradual weaning of external ventricular drain for hydrocephalus following aneurysmal subarachnoid haemorrhage: a statistical analysis plan for the DRAIN randomised clinical trial.
Capion T, Lilja-Cyron A, Juhler M, Møller K, Sorteberg A, Rønning PA, Poulsen FR, Wismann J, Schack AE, Ravlo C, Isaksen J, Lindschou J, Gluud C, Mathiesen T, Olsen MH. Capion T, et al. Among authors: ronning pa. Trials. 2024 Jul 15;25(1):479. doi: 10.1186/s13063-024-08305-4. Trials. 2024. PMID: 39010208 Free PMC article.
Time from injury to acute surgery for patients with traumatic cervical spinal cord injury in South-East Norway.
Aarhus M, Mirzamohammadi J, Rønning PA, Strøm M, Glott T, Rizvi SAM, Biernat D, Ølstørn H, Rydning PNF, Stenset VTV, Næss PA, Gaarder C, Brommeland T, Linnerud H, Helseth E. Aarhus M, et al. Among authors: ronning pa. Front Neurol. 2024 Jun 24;15:1420530. doi: 10.3389/fneur.2024.1420530. eCollection 2024. Front Neurol. 2024. PMID: 38978812 Free PMC article.
160 results