Jones SJM - Search Results

1

Genome-wide discovery of somatic regulatory variants in diffuse large B-cell lymphoma.

Arthur SE, Jiang A, Grande BM, Alcaide M, Cojocaru R, Rushton CK, Mottok A, Hilton LK, Lat PK, Zhao EY, Culibrk L, Ennishi D, Jessa S, Chong L, Thomas N, Pararajalingam P, Meissner B, Boyle M, Davidson J, Bushell KR, Lai D, Farinha P, Slack GW, Morin GB, Shah S, Sen D, Jones SJM, Mungall AJ, Gascoyne RD, Audas TE, Unrau P, Marra MA, Connors JM, Steidl C, Scott DW, Morin RD. Arthur SE, et al. Among authors: jones sjm. Nat Commun. 2018 Oct 1;9(1):4001. doi: 10.1038/s41467-018-06354-3. Nat Commun. 2018. PMID: 30275490 Free PMC article.

2

Temperature-regulated transcription in the pathogenic fungus Cryptococcus neoformans.

Steen BR, Lian T, Zuyderduyn S, MacDonald WK, Marra M, Jones SJ, Kronstad JW. Steen BR, et al. Genome Res. 2002 Sep;12(9):1386-400. doi: 10.1101/gr.80202. Genome Res. 2002. PMID: 12213776 Free PMC article.

3

Physical maps for genome analysis of serotype A and D strains of the fungal pathogen Cryptococcus neoformans.

Schein JE, Tangen KL, Chiu R, Shin H, Lengeler KB, MacDonald WK, Bosdet I, Heitman J, Jones SJ, Marra MA, Kronstad JW. Schein JE, et al. Genome Res. 2002 Sep;12(9):1445-53. doi: 10.1101/gr.81002. Genome Res. 2002. PMID: 12213782 Free PMC article.

4

A SAGE approach to discovery of genes involved in autophagic cell death.

Gorski SM, Chittaranjan S, Pleasance ED, Freeman JD, Anderson CL, Varhol RJ, Coughlin SM, Zuyderduyn SD, Jones SJ, Marra MA. Gorski SM, et al. Curr Biol. 2003 Feb 18;13(4):358-63. doi: 10.1016/s0960-9822(03)00082-4. Curr Biol. 2003. PMID: 12593804 Free article.

5

Assessment of SAGE in transcript identification.

Pleasance ED, Marra MA, Jones SJ. Pleasance ED, et al. Genome Res. 2003 Jun;13(6A):1203-15. doi: 10.1101/gr.873003. Epub 2003 May 12. Genome Res. 2003. PMID: 12743019 Free PMC article.

6

Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps.

Fjell CD, Bosdet I, Schein JE, Jones SJ, Marra MA. Fjell CD, et al. Genome Res. 2003 Jun;13(6A):1244-9. doi: 10.1101/gr.819303. Genome Res. 2003. PMID: 12799356 Free PMC article.

7

Effect of TERT and ATM on gene expression profiles in human fibroblasts.

Baross A, Schertzer M, Zuyderduyn SD, Jones SJ, Marra MA, Lansdorp PM. Baross A, et al. Genes Chromosomes Cancer. 2004 Apr;39(4):298-310. doi: 10.1002/gcc.20006. Genes Chromosomes Cancer. 2004. PMID: 14978791

8

Iron-regulated transcription and capsule formation in the fungal pathogen Cryptococcus neoformans.

Lian T, Simmer MI, D'Souza CA, Steen BR, Zuyderduyn SD, Jones SJ, Marra MA, Kronstad JW. Lian T, et al. Mol Microbiol. 2005 Mar;55(5):1452-72. doi: 10.1111/j.1365-2958.2004.04474.x. Mol Microbiol. 2005. PMID: 15720553 Free article.

9

Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression.

Halaschek-Wiener J, Khattra JS, McKay S, Pouzyrev A, Stott JM, Yang GS, Holt RA, Jones SJ, Marra MA, Brooks-Wilson AR, Riddle DL. Halaschek-Wiener J, et al. Genome Res. 2005 May;15(5):603-15. doi: 10.1101/gr.3274805. Epub 2005 Apr 18. Genome Res. 2005. PMID: 15837805 Free PMC article.

10

Management and visualization of whole genome shotgun assemblies using SAM.

Warren RL, Butterfield YS, Morin RD, Siddiqui AS, Marra MA, Jones SJ. Warren RL, et al. Biotechniques. 2005 May;38(5):715-6, 718, 720. doi: 10.2144/05385ST01. Biotechniques. 2005. PMID: 15945370 Free article.

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