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Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast.
Moteshareie H, Hajikarimlou M, Mulet Indrayanti A, Burnside D, Paula Dias A, Lettl C, Ahmed D, Omidi K, Kazmirchuk T, Puchacz N, Zare N, Takallou S, Naing T, Hernández RB, Willmore WG, Babu M, McKay B, Samanfar B, Holcik M, Golshani A. Moteshareie H, et al. Among authors: golshani a. PLoS One. 2018 Sep 19;13(9):e0198704. doi: 10.1371/journal.pone.0198704. eCollection 2018. PLoS One. 2018. PMID: 30231023 Free PMC article.
Large-scale investigation of oxygen response mutants in Saccharomyces cerevisiae.
Samanfar B, Omidi K, Hooshyar M, Laliberte B, Alamgir M, Seal AJ, Ahmed-Muhsin E, Viteri DF, Said K, Chalabian F, Golshani A, Wainer G, Burnside D, Shostak K, Bugno M, Willmore WG, Smith ML, Golshani A. Samanfar B, et al. Among authors: golshani a. Mol Biosyst. 2013 Jun;9(6):1351-9. doi: 10.1039/c3mb25516f. Epub 2013 Mar 7. Mol Biosyst. 2013. PMID: 23467670
A global investigation of gene deletion strains that affect premature stop codon bypass in yeast, Saccharomyces cerevisiae.
Samanfar B, Tan le H, Shostak K, Chalabian F, Wu Z, Alamgir M, Sunba N, Burnside D, Omidi K, Hooshyar M, Galván Márquez I, Jessulat M, Smith ML, Babu M, Azizi A, Golshani A. Samanfar B, et al. Among authors: golshani a. Mol Biosyst. 2014 Apr;10(4):916-24. doi: 10.1039/c3mb70501c. Epub 2014 Feb 18. Mol Biosyst. 2014. PMID: 24535059
Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.
Babu M, Arnold R, Bundalovic-Torma C, Gagarinova A, Wong KS, Kumar A, Stewart G, Samanfar B, Aoki H, Wagih O, Vlasblom J, Phanse S, Lad K, Yeou Hsiung Yu A, Graham C, Jin K, Brown E, Golshani A, Kim P, Moreno-Hagelsieb G, Greenblatt J, Houry WA, Parkinson J, Emili A. Babu M, et al. Among authors: golshani a. PLoS Genet. 2014 Feb 20;10(2):e1004120. doi: 10.1371/journal.pgen.1004120. eCollection 2014 Feb. PLoS Genet. 2014. PMID: 24586182 Free PMC article.
Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli.
Vlasblom J, Zuberi K, Rodriguez H, Arnold R, Gagarinova A, Deineko V, Kumar A, Leung E, Rizzolo K, Samanfar B, Chang L, Phanse S, Golshani A, Greenblatt JF, Houry WA, Emili A, Morris Q, Bader G, Babu M. Vlasblom J, et al. Among authors: golshani a. Bioinformatics. 2015 Feb 1;31(3):306-10. doi: 10.1093/bioinformatics/btu671. Epub 2014 Oct 13. Bioinformatics. 2015. PMID: 25316676 Free PMC article.
Efficient prediction of human protein-protein interactions at a global scale.
Schoenrock A, Samanfar B, Pitre S, Hooshyar M, Jin K, Phillips CA, Wang H, Phanse S, Omidi K, Gui Y, Alamgir M, Wong A, Barrenäs F, Babu M, Benson M, Langston MA, Green JR, Dehne F, Golshani A. Schoenrock A, et al. Among authors: golshani a. BMC Bioinformatics. 2014 Dec 10;15(1):383. doi: 10.1186/s12859-014-0383-1. BMC Bioinformatics. 2014. PMID: 25492630 Free PMC article.
110 results