Weng Z - Search Results

1

Differential analysis of chromatin accessibility and histone modifications for predicting mouse developmental enhancers.

Fu S, Wang Q, Moore JE, Purcaro MJ, Pratt HE, Fan K, Gu C, Jiang C, Zhu R, Kundaje A, Lu A, Weng Z. Fu S, et al. Among authors: weng z. Nucleic Acids Res. 2018 Nov 30;46(21):11184-11201. doi: 10.1093/nar/gky753. Nucleic Acids Res. 2018. PMID: 30137428 Free PMC article.

2

Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences.

Frith MC, Spouge JL, Hansen U, Weng Z. Frith MC, et al. Among authors: weng z. Nucleic Acids Res. 2002 Jul 15;30(14):3214-24. doi: 10.1093/nar/gkf438. Nucleic Acids Res. 2002. PMID: 12136103 Free PMC article.

3

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

Frith MC, Li MC, Weng Z. Frith MC, et al. Among authors: weng z. Nucleic Acids Res. 2003 Jul 1;31(13):3666-8. doi: 10.1093/nar/gkg540. Nucleic Acids Res. 2003. PMID: 12824389 Free PMC article.

4

Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification.

Haverty PM, Hansen U, Weng Z. Haverty PM, et al. Among authors: weng z. Nucleic Acids Res. 2004 Jan 2;32(1):179-88. doi: 10.1093/nar/gkh183. Print 2004. Nucleic Acids Res. 2004. PMID: 14704355 Free PMC article.

5

Finding functional sequence elements by multiple local alignment.

Frith MC, Hansen U, Spouge JL, Weng Z. Frith MC, et al. Among authors: weng z. Nucleic Acids Res. 2004 Jan 2;32(1):189-200. doi: 10.1093/nar/gkh169. Print 2004. Nucleic Acids Res. 2004. PMID: 14704356 Free PMC article.

6

Detection of functional DNA motifs via statistical over-representation.

Frith MC, Fu Y, Yu L, Chen JF, Hansen U, Weng Z. Frith MC, et al. Among authors: weng z. Nucleic Acids Res. 2004 Feb 26;32(4):1372-81. doi: 10.1093/nar/gkh299. Print 2004. Nucleic Acids Res. 2004. PMID: 14988425 Free PMC article.

7

Modeling gene expression using chromatin features in various cellular contexts.

Dong X, Greven MC, Kundaje A, Djebali S, Brown JB, Cheng C, Gingeras TR, Gerstein M, Guigó R, Birney E, Weng Z. Dong X, et al. Among authors: weng z. Genome Biol. 2012 Jun 13;13(9):R53. doi: 10.1186/gb-2012-13-9-r53. Genome Biol. 2012. PMID: 22950368 Free PMC article.

8

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.

Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, Weng Z. Wang J, et al. Among authors: weng z. Genome Res. 2012 Sep;22(9):1798-812. doi: 10.1101/gr.139105.112. Genome Res. 2012. PMID: 22955990 Free PMC article.

9

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.

Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D, Birney E, Hung JH, Weng Z. Wang J, et al. Among authors: weng z. Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6. doi: 10.1093/nar/gks1221. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203885 Free PMC article.

10

TEMP: a computational method for analyzing transposable element polymorphism in populations.

Zhuang J, Wang J, Theurkauf W, Weng Z. Zhuang J, et al. Among authors: weng z. Nucleic Acids Res. 2014 Jun;42(11):6826-38. doi: 10.1093/nar/gku323. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753423 Free PMC article.

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